Duplicated instance of all the bacterial metabolism
2 instances with the same content are generated in the tmp directory. e.g. for the lipids in the gut
lipids_gut_all_instances.lp
sbml_all_bact_instances.lp
It isn't clear what bit of code generates the second file.
Call:
powerfun analysis -b sbml/ -s seeds_gut.sbml -p gut_target_pg_bbl/lipids_gut.bbl -gt gut_genome_taxonomy.tsv -ta targets_tsv/lipids_gut.tsv -tp ../tmp/allgut_tmp -od ../tmp/allgut_res -c 2