2022-04-29 Audric Cologne <audric.cologne@univ-lyon1.fr>
* 2.5.5 -> 2.6.0
Improvements:
- manpage and user_guide.pdf build process should now be reproducible
Method:
- Most of duplicated bubbles are now compressed in KisSplice (note the case for too large IR), improving speed and output clarity
- Remove paths with too low Shannon entropy, improving speed
- These two new filters can be disable with --keep-redundancy and --keep-low-complexity
- Information on removed or compressed bubbles can be output with --get-redundance-info and --get-low-complexity-info
Option:
- Added --type1-only parameter to only quantify and output Type_1 bubbles (Alternative Splicing Events). Major speed-up for b > 10