Issues · vidjil / vidjil · GitLab

Le contrôleur run redirige sur l'ancien contrôleur run/index

#2293 · opened Mar 24, 2017 by Ryan Herbert !!-bug dev-refactor server
- CLOSED
- 0
updated May 22, 2017
Pas de comparaison en dur à V/D/J

#2488 · opened May 23, 2017 by Mathieu Giraud bio-germlines client dev-refactor
- 0
updated May 23, 2017
mutliple_scatterplot : id des clones dans le dom

#2492 · opened May 23, 2017 by Mathieu Giraud !-hard !-reflexion client client-bar client-grid dev-refactor
- 0
updated May 23, 2017
segmenteur: méthodes à implémenter sur l'object "Sequence"

#2510 · opened Jun 02, 2017 by Mathieu Giraud client-segmenter dev-refactor
- CLOSED
- 5
updated Aug 30, 2017
exportFasta: ne pas faire de choses particulières selon les germlines

#2511 · opened Jun 02, 2017 by Mathieu Giraud bio-germlines bio-germlines-pseudo client dev-refactor
- 0
updated Jun 02, 2017
axes: factoriser encore un peu available_axis

#2361 · opened Apr 11, 2017 by Mathieu Giraud client client-axis dev-refactor
- CLOSED
- 1
updated Sep 15, 2017
Faire marcher 'algo/tools' avec la réorganisation Fasta/BAM

#2551 · opened Jul 07, 2017 by Mathieu Giraud dev-refactor repseq-formats
- CLOSED
- 1
- 4
updated Aug 28, 2017
VidjilAuth : ne pas avoir de chaîne en dur

#2554 · opened Jul 12, 2017 by Mathieu Giraud dev-refactor server-auth
- 0
updated Jul 12, 2017
haml

#2585 · opened Aug 23, 2017 by Mathieu Giraud !-reflexion client dev-refactor
- 0
updated Aug 23, 2017
delete() dans patient.py et run.py

#2592 · opened Aug 25, 2017 by Mathieu Giraud dev-refactor server
- 0
updated Aug 25, 2017
Ranger data

#2611 · opened Sep 06, 2017 by Mathieu Giraud Algo 2017.11 com-first-time-user cpp dev-refactor dev-tests
- CLOSED
- 2
- 0
updated Nov 24, 2017
Réduire fortement /Makefile

#2630 · opened Sep 12, 2017 by Mathieu Giraud Algo 2017.11 !-hard dev-build dev-ci dev-refactor
- CLOSED
- 9
updated Jan 29, 2018
Utiliser pour les axes {gene,allele}_{v_j} les mécanismes standards

#2641 · opened Sep 15, 2017 by Mathieu Giraud client client-axis dev-refactor
- CLOSED
- 1
- 1
updated Aug 08, 2018
Normalisation : renommer les variables A et B

#2669 · opened Sep 26, 2017 by Mikaël Salson *-go client-normalization dev-refactor
- CLOSED
- 1
- 0
updated Dec 08, 2017
mettre des print() dans task.py

#2685 · opened Oct 05, 2017 by Mathieu Giraud Web 2017.11 *-go dev-refactor
- CLOSED
- 1
- 1
updated Nov 18, 2017
Réduire les différences entre MODE_BAR et MODE_GRID

#2700 · opened Oct 10, 2017 by Mathieu Giraud Web 2018.01 !-hard client client-axis client-grid dev-refactor
- 5
updated Oct 03, 2018
Traitement des options : refactorer vidjil.cpp avec CLI11

#2732 · opened Oct 18, 2017 by Mathieu Giraud Algo 2018.08 !-hard *-go +-working cpp cpp-options dev-refactor
- CLOSED
- 1
- 1
updated Jun 27, 2018
Refactoriser views/{patient,run,sample_set}/index.html dans une unique vue

#2746 · opened Oct 21, 2017 by Mathieu Giraud !-hard client-database dev-refactor
- CLOSED
- 1
- 2
updated Mar 21, 2018
export.js : seg_box et systemPie dans des fonctions à part

#1385 · opened Nov 29, 2016 by Vidjil Team *-go client client-export dev-policy dev-refactor priority-2
- 0
updated Oct 23, 2017
Organiser les sample_sets par projet pour accélérer les requêtes

#2747 · opened Oct 23, 2017 by Ryan Herbert !-hard !-reflexion dev-refactor server server-auth server-database server-speed
- 4
updated Jan 17, 2019
Le découpage des méthodes "update" est-il judicieux ?

#2771 · opened Nov 03, 2017 by Ryan Herbert !-hard !-reflexion client client-speed dev-refactor
- CLOSED
- 1
updated Nov 08, 2017
Multiple scatterplot : créer une seule fois sp2

#2810 · opened Nov 19, 2017 by Mathieu Giraud client-grid dev-refactor
- 0
updated Nov 19, 2017
clone.shortName n'est pas utilisé

#2892 · opened Nov 23, 2017 by Mathieu Giraud client dev-dead-code dev-refactor
- 1
- 0
updated Nov 24, 2017
Groupe public géré par web2py

#2959 · opened Dec 19, 2017 by Mathieu Giraud !-reflexion dev-refactor server server-auth server-groups
- 1
updated Jan 08, 2018
Classes pour les méthodes de segmentation

#2968 · opened Dec 22, 2017 by Mathieu Giraud Algo -- Important !-hard *-go cpp cpp-heuristic dev-refactor
- 3
updated Jul 16, 2018
Ne pas avoir de variables globales sur les différentes vues

#2201 · opened Feb 28, 2017 by Mathieu Giraud !-hard !-reflexion client dev-policy dev-refactor
- 3
updated Nov 29, 2019
Stats : controlleur 'stats' vs controlleur 'compare patients' vs controlleur 'set'

#3064 · opened Feb 27, 2018 by Mathieu Giraud !-reflexion dev-refactor server
- 0
updated Feb 27, 2018
germline_id, *.g et vidjil-algo

#3084 · opened Mar 15, 2018 by Mathieu Giraud !-reflexion bio-germlines dev-refactor
- 0
updated Mar 15, 2018
should: tests en cas de refactor

#3116 · opened Apr 04, 2018 by Mathieu Giraud dev-refactor dev-tests dev-tests-should-get
- CLOSED
- 7
updated Apr 20, 2018
Extraction d'info depuis .vidjil pour contrôleur stats

#3172 · opened Apr 13, 2018 by Mathieu Giraud dev-refactor server-fuse server-qc-stats
- CLOSED
- 2
updated Sep 14, 2018
Factoriser js/form_builder.js et views/partial/file/form.html

#3184 · opened Apr 17, 2018 by Mathieu Giraud !-hard client dev-refactor
- 2
updated Apr 17, 2018
Extraire buildACAutomatonToFilterBioReader et filterBioReaderWithACAutomaton vers un nouveau filter.cpp

#3188 · opened Apr 17, 2018 by Mathieu Giraud cpp cpp-filter-fine dev-refactor
- CLOSED
- 0
updated Jun 12, 2018
Repasser sur les tests .should-get en bénéficiant de la nouvelle syntaxe

#3206 · opened Apr 20, 2018 by Mathieu Giraud dev-refactor dev-tests-should-get
- 6
updated Apr 19, 2019
fuse.py, et champs à merger comme diversity

#3254 · opened Jun 04, 2018 by Mathieu Giraud dev-refactor server-fuse
- 0
updated Jan 10, 2019
Utiliser NO_LIMIT_VALUE plutôt que UINT_MAX dans filter.h/filter.cpp

#3270 · opened Jun 12, 2018 by Mathieu Giraud merge-filter *-go bikeshedding cpp-filter-fine dev-refactor
- CLOSED
- 2
updated Jun 13, 2018
Merge du travail de Cyprien et historique du git

#3272 · opened Jun 12, 2018 by Mathieu Giraud merge-filter cpp-filter-fine dev-refactor
- CLOSED
- 3
updated Jun 13, 2018
Factoriser le code dans filterBioReaderWithACAutomaton

#3282 · opened Jun 13, 2018 by Mikaël Salson cpp cpp-filter-fine dev-refactor
- CLOSED
- 1
- 10
updated Jul 04, 2018
Refactorer filter.cpp en une classe Filter

#3283 · opened Jun 13, 2018 by Mathieu Giraud Algo 2018.08 cpp-filter-fine dev-refactor
- CLOSED
- 1
- 7
updated Jul 04, 2018
Rationnaliser la déclaration des graines (explicites, constantes, par défaut)

#3293 · opened Jun 17, 2018 by Mathieu Giraud Algo 2018.08 bikeshedding cpp-options dev-refactor
- CLOSED
- 1
- 2
updated Jul 10, 2018
Renommer les modes de DP pour être plus systématique et précis

#3319 · opened Jun 28, 2018 by Mathieu Giraud bikeshedding cpp-dynprog dev-refactor
- 0
updated Jun 28, 2018
Objets 'Output', où mettre la préparation complète du json_clone ?

#3358 · opened Jul 11, 2018 by Mathieu Giraud cpp-export dev-refactor
- CLOSED
- 13
updated Nov 21, 2018
Gestion plus propre des warnings

#3360 · opened Jul 11, 2018 by Mikaël Salson Algo 2019.05 !-reflexion client-warning cpp dev-refactor
- 1
- 3
updated Mar 14, 2019
Mettre un objet "Clone" dans le cpp

#3380 · opened Jul 13, 2018 by Mathieu Giraud !-hard cpp dev-refactor
- CLOSED
- 1
updated Dec 04, 2018
top par système dans vidjil-algo

#3381 · opened Jul 13, 2018 by Mathieu Giraud Algo -- Important *-go cpp cpp-export dev-refactor
- 0
updated Mar 14, 2019
d3.js : conserver, changer ?

#3437 · opened Aug 13, 2018 by Mathieu Giraud !-hard !-reflexion client-speed dev-refactor
- 2
updated Jan 10, 2019
Modulariser .gitlab-ci.yml

#3450 · opened Sep 07, 2018 by Mathieu Giraud *-go dev-gitlab dev-refactor
- 5
updated Dec 04, 2019
Extraire/tester isProductive/referencePhase dans clone.js

#3483 · opened Sep 26, 2018 by Mathieu Giraud *-go client dev-refactor dev-tests
- CLOSED
- 1
- 2
updated Sep 27, 2018
should_results_from_vidjil() pourrait utiliser le .vidjil ou bien le .tsv

#3567 · opened Oct 17, 2018 by Mathieu Giraud dev-refactor dev-tests-curated-vdj
- 1
updated Oct 17, 2018
Sous-classer SampleOutputAIRR() depuis un SampleOutputCSV()

#3570 · opened Oct 17, 2018 by Mathieu Giraud cpp dev-refactor repseq-formats-airr
- 1
- 0
updated Oct 24, 2018
stdout / .vdj.fa comme sous-classe de CloneOutput()

#3592 · opened Oct 24, 2018 by Mathieu Giraud *-go cpp dev-refactor
- 1
updated Mar 14, 2019
Moins de json dans Sample/CloneOutput ?

#3593 · opened Oct 24, 2018 by Mathieu Giraud !-reflexion cpp dev-refactor
- 0
updated Oct 24, 2018
Refactor normalisation

#3644 · opened Nov 30, 2018 by Mathieu Giraud *-go Boldrini-Brasil client-normalization dev-refactor
- CLOSED
- 2
- 1
updated Dec 28, 2018
Savoir si une germline est incomplète ou pas ?

#3725 · opened Feb 12, 2019 by Mathieu Giraud !-easy bio-germlines-pseudo cpp dev-refactor priority-1-low
- 0
updated Feb 12, 2019
Utilisation de getS() ou de la graîne avec Aho-Corasick

#3727 · opened Feb 12, 2019 by Mikaël Salson Heuristique 2.0 cpp cpp-aho cpp-heuristic dev-refactor
- 4
updated Feb 28, 2019
FineSegmenter et séquences revcomp ?

#3736 · opened Feb 14, 2019 by Mathieu Giraud !-reflexion cpp-finesegmenter dev-refactor priority-1-low
- 0
updated Feb 14, 2019
Retirer les `using namespace std`

#3739 · opened Feb 14, 2019 by Mathieu Giraud !-easy *-go cpp dev-refactor
- 0
updated Feb 14, 2019
override_rep5_rep3 ne devrait pas changer temporairement un objet

#3942 · opened Jun 24, 2019 by Mathieu Giraud bio-germlines-pseudo dev-refactor
- 1
updated Jul 08, 2019
Refactor repseq_vdj

#3953 · opened Jul 11, 2019 by Mathieu Giraud dev-refactor dev-tests-curated-vdj
- 0
updated Jul 11, 2019
un clone ajouté manuellement passe à 100k reads si clusterisé

#3956 · opened Jul 23, 2019 by Thonier Florian !!-bug client client-virtual-clone dev-refactor
- 1
updated Jul 23, 2019
updateStats(): dans model.js ?

#4000 · opened Oct 08, 2019 by Mathieu Giraud !-reflexion dev-refactor
- 0
updated Oct 08, 2019
Indépendance vue/modèle : des vues vont taper dans d'autres vues

#4074 · opened Nov 29, 2019 by Mikaël Salson client client-api client-grid dev-refactor dev-robust
- 2
updated Nov 29, 2019
Simplifier les smartUpdate()

#4084 · opened Dec 04, 2019 by Mathieu Giraud client-views dev-refactor
- 0
updated Dec 04, 2019
Limiter les accès au DOM

#2463 · opened May 16, 2017 by Mathieu Giraud client dev-policy dev-refactor
- 0
updated May 30, 2017
segmenter.js : refactorer updateElem()

#2462 · opened May 16, 2017 by Mathieu Giraud client client-segmenter dev-policy dev-refactor doc
- CLOSED
- 2
- 9
updated Dec 06, 2019
Segmenteur : extraire addGermlineSequence() de addSequence()

#2459 · opened May 16, 2017 by Mathieu Giraud client client-segmenter dev-refactor
- CLOSED
- 1
updated May 23, 2017
Application des axes dans list.js et segmenter.js

#2451 · opened May 16, 2017 by Ryan Herbert Web 2017.05 client client-axis client-axis-columns dev-policy dev-refactor
- CLOSED
- 1
- 7
updated May 19, 2017
Extraire une vue Info de builder.js

#2446 · opened May 15, 2017 by Mathieu Giraud !-reflexion client client-responsive client-views dev-refactor
- CLOSED
- 1
- 5
updated Jun 07, 2017
Segmenteur, gènes VDJ: refactorer encore, highlights

#2440 · opened May 12, 2017 by Mathieu Giraud client client-segmenter dev-refactor
- 1
updated Nov 29, 2017
Eviter les initialisations multiples

#2438 · opened May 12, 2017 by Téo Vasseur !-hard !-reflexion client client-speed client-views dev-refactor
- 4
updated Nov 14, 2017
Code similaire dans list.div_elem et segmenter.div_elem

#2388 · opened Apr 25, 2017 by Téo Vasseur client-cloneList client-segmenter dev-refactor
- 1
updated Aug 30, 2017
axis: mettre toutes les valeurs de available_axis dans GenericAxis()

#2368 · opened Apr 12, 2017 by Mathieu Giraud client client-axis dev-refactor
- 1
updated Aug 08, 2018
axes: déplacer available_axis quelque part

#2367 · opened Apr 12, 2017 by Mathieu Giraud client client-axis dev-refactor
- CLOSED
- 1
updated Apr 14, 2017
segmenteur, gènes VDJ : quels objets créer ?

#2357 · opened Apr 11, 2017 by Mathieu Giraud !-reflexion client client-segmenter dev-refactor
- CLOSED
- 10
updated May 15, 2017
refactorer .getHtmlInfo

#2338 · opened Apr 05, 2017 by Mathieu Giraud client dev-refactor
- CLOSED
- 0
updated Apr 08, 2017
`germline` ne devrait pas être une variable globale

#2271 · opened Mar 21, 2017 by Mathieu Giraud client dev-refactor
- 0
updated Apr 25, 2017
Fournir un module python qui sait lire, vérifier et générer des fichiers vidjil

#2240 · opened Mar 09, 2017 by Ryan Herbert collaboration dev-refactor repseq-platform server-fuse server-qc-stats
- CLOSED
- 8
updated Jun 12, 2019
Déplacer focus et hide dans model.js, et les tester

#2228 · opened Mar 08, 2017 by Mathieu Giraud *-go +-working dev-refactor dev-tests
- CLOSED
- 0
updated Mar 15, 2017
clone.js: factoriser getSize() et getSize2()

#2204 · opened Mar 01, 2017 by Mathieu Giraud client client-normalization dev-refactor
- 0
updated Mar 01, 2017
patient/index et run/index sont-ils encore utiles ?

#2198 · opened Feb 22, 2017 by Mikaël Salson dev-dead-code dev-refactor server server-sample-sets
- CLOSED
- 3
updated Apr 28, 2017
Factoriser les doublons entre list.js et segmenter.js

#1763 · opened Nov 29, 2016 by Vidjil Team Web 2017.05 client client-cloneList client-segmenter dev-policy dev-refactor priority-3-month
- CLOSED
- 15
updated May 23, 2017
model.js et vues: updateXxx(), découpage judicieux ?

#1559 · opened Nov 29, 2016 by Vidjil Team !-hard !-reflexion client client-speed dev-refactor doc
- 7
updated Nov 04, 2019
Axes génériques : refactor scatterplot

#1471 · opened Nov 29, 2016 by Vidjil Team !-hard !-important *-go client client-axis dev-policy dev-refactor feature priority-3-month
- CLOSED
- 2
updated Apr 27, 2017
Supprimer KmerStringAffect ?

#1209 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp dev-dead-code dev-refactor dev-robust priority-2
- CLOSED
- 0
updated Nov 29, 2016
vidjil.cpp: alléger le traitement de cluster-junctions.cpp

#1183 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp cpp-cluster dev-refactor dev-robust priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Tout ce qui touche au clustalw

#1182 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp dev-refactor dev-robust priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
vidjil.cpp: supprimer clustalw

#1181 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp dev-refactor dev-robust priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
vidjil.cpp : modulariser selon les différentes commandes

#1180 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp dev-refactor dev-robust priority-1-low
- 0
updated Nov 29, 2016
Clones sans representative ?

#1167 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp-representative dev-dead-code dev-refactor priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
model.js devrait faire moins de 2000 lignes :)

#1082 · opened Nov 29, 2016 by Vidjil Team old_tracker client dev-refactor priority-1-low
- CLOSED
- 0
updated Nov 29, 2016