-c COMMAND command clones locus detection, window extraction, clone clustering (default command, most efficient, all outputs) windows locus detection, window extraction segment detailed V(D)J designation (not recommended) germlines statistics on k-mers in different germlines
segment par ce qui suit ?
designate detailed V(D)J designation, without prior clustering (not as efficient)
Et l'avertissement :
* WARNING: vidjil-algo was run with '-c segment' option * vidjil-algo efficientl extracts windows overlapping the CDR3 * to cluster reads into clones ('-c clones'). * Computing accurate V(D)J designations for many sequences ('-c segment' or large '-z' values) * is slow and should be done only on small datasets or for testing purposes. * More information is provided in the 'doc/vidjil-algo.md' file.
Avant-dernière ligne, à la place :
* is not as efficient as the default '-c clones' command
Et on enlève "should be done only on small datasets or for testing purposes" ?
Voir aussi #3295 (closed).