vidjil issueshttps://gitlab.inria.fr/vidjil/vidjil/-/issues2023-12-21T17:05:47+01:00https://gitlab.inria.fr/vidjil/vidjil/-/issues/5179Py4web; unit tests2023-12-21T17:05:47+01:00THONIER FlorianPy4web; unit testsServer - py4webCHESNIN ClementCHESNIN Clementhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5169py4web: after user creation, redirection fails2023-12-05T14:51:37+01:00Mikaël Salsonpy4web: after user creation, redirection failsAfter user creation (which succeeds), redirection to the index page fails.After user creation (which succeeds), redirection to the index page fails.Server - py4webCHESNIN ClementCHESNIN Clementhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5166CI; use registry for cypress2023-10-05T15:47:00+02:00THONIER FlorianCI; use registry for cypressUse local gitlab registry for docker image.
* [ ] Use image for cypress
* [ ] Use image for server
* [ ] Use for algo (gcc, clang, ...)Use local gitlab registry for docker image.
* [ ] Use image for cypress
* [ ] Use image for server
* [ ] Use for algo (gcc, clang, ...)https://gitlab.inria.fr/vidjil/vidjil/-/issues/5165CI; Adapt variable to new gitlab version (v16)2023-10-05T07:27:38+02:00THONIER FlorianCI; Adapt variable to new gitlab version (v16)Need to change at least `CI_BUILD_REF_SLUG` by `CI_COMMIT_REF_SLUG`Need to change at least `CI_BUILD_REF_SLUG` by `CI_COMMIT_REF_SLUG`https://gitlab.inria.fr/vidjil/vidjil/-/issues/5157API and Py4web: make it work2023-11-28T13:07:50+01:00THONIER FlorianAPI and Py4web: make it workFor the moment, API don't work out of the box:
* some forms have variation on dom ids
* Auth user is not directly accessible
* Use of generic.json as in web2py seem to be impossible (or at least modified and not documented).For the moment, API don't work out of the box:
* some forms have variation on dom ids
* Auth user is not directly accessible
* Use of generic.json as in web2py seem to be impossible (or at least modified and not documented).Server - py4webhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5155Follow-up from "Draft: Py4web; apply mulitple changes to backend server code."2023-11-06T15:04:09+01:00THONIER FlorianFollow-up from "Draft: Py4web; apply mulitple changes to backend server code."The following discussion from !1338 should be addressed:
- [ ] @fthonier started a [discussion](https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1338#note_862390):
> Supprimer aussi les règles associées.The following discussion from !1338 should be addressed:
- [ ] @fthonier started a [discussion](https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1338#note_862390):
> Supprimer aussi les règles associées.Web 2023.10https://gitlab.inria.fr/vidjil/vidjil/-/issues/5140Show percentage by locus in addition that by sample2023-06-29T14:57:42+02:00THONIER FlorianShow percentage by locus in addition that by sampleA feature asked by some users: Be able to show percentage of clonotype inside his own locus in the client.
An alternative inside scatterplot exist with preset 17; locus by size, but not in list of clonotype.
Warning, a locus with only ...A feature asked by some users: Be able to show percentage of clonotype inside his own locus in the client.
An alternative inside scatterplot exist with preset 17; locus by size, but not in list of clonotype.
Warning, a locus with only few reads (wet lab/sequencing failure) can easily have a clonotype at a high level.Web 2023.10THONIER FlorianTHONIER Florianhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5139Document analysis configurations2023-06-21T15:11:48+02:00Mathieu GiraudDocument analysis configurationshttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5135Report: include alignment2023-05-23T17:13:40+02:00Mathieu GiraudReport: include alignment
By @Aurelie
- On several lines ?
- On one line (at some position)
By @Aurelie
- On several lines ?
- On one line (at some position)https://gitlab.inria.fr/vidjil/vidjil/-/issues/5125scatterplot; Add grahp update after a click on a scatterplot label2023-06-15T10:58:14+02:00THONIER Florianscatterplot; Add grahp update after a click on a scatterplot labelFor the moment, when we made a click on a scatterplot label, a selection is made on clonotype and an update of multiple view is done (at least scatterplot, clonotype list and aliger).
But the timeline graphic is seem to be not updated. ...For the moment, when we made a click on a scatterplot label, a selection is made on clonotype and an update of multiple view is done (at least scatterplot, clonotype list and aliger).
But the timeline graphic is seem to be not updated. Clonotype line is not shown as selected and a simple `m.update()` in console fix the issue.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5114similarity: être en Global2023-03-09T14:32:58+01:00Mathieu Giraudsimilarity: être en Globalhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5105Run multiple pre/post fuse process in the same time2023-03-02T17:14:28+01:00Thonier FlorianRun multiple pre/post fuse process in the same timeAdd a way to make call to multiple script for prefuse/postfuse.Add a way to make call to multiple script for prefuse/postfuse.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5102Fuse, bad merge of sample warnings2023-01-12T15:31:57+01:00Thonier FlorianFuse, bad merge of sample warningsWarnings of sample is not correctly design. We are not able to reasign these warnings to the correct sample.
On the client side, we don't show these values for the moment.
Need to be improve on the both side
* [ ] Better merge of war...Warnings of sample is not correctly design. We are not able to reasign these warnings to the correct sample.
On the client side, we don't show these values for the moment.
Need to be improve on the both side
* [ ] Better merge of warn (include sample position related to warning)
* [ ] Show warnings on the client ==> #5103https://gitlab.inria.fr/vidjil/vidjil/-/issues/5093report: use clone N region setting2022-11-23T17:10:52+01:00Thonier Florianreport: use clone N region settingUse the selected N region settings in the reportUse the selected N region settings in the reportWeb 2022.12https://gitlab.inria.fr/vidjil/vidjil/-/issues/5086Form does not allow blank password2022-11-08T21:19:18+01:00Joao MeidanisForm does not allow blank passwordThe update user page says, "To change user profile without changing the password, leave it blank', but in the HTML form the passowrd and confirmation fields are 'required', preventing the user from 'leaving them blank'.The update user page says, "To change user profile without changing the password, leave it blank', but in the HTML form the passowrd and confirmation fields are 'required', preventing the user from 'leaving them blank'.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5081Axe "Number of samples" ne fonctionne pas ?2022-11-04T13:42:36+01:00Mathieu GiraudAxe "Number of samples" ne fonctionne pas ?Web 2022.12https://gitlab.inria.fr/vidjil/vidjil/-/issues/5078py4web : impersonnate2023-12-08T15:08:19+01:00Mathieu Giraudpy4web : impersonnate
@duez: "il faut convertir les fonctions impersonate() et is_impersonating() de web2py et les ajouter a VidjilAuth.py"
@duez: "il faut convertir les fonctions impersonate() et is_impersonating() de web2py et les ajouter a VidjilAuth.py"Server - py4webCHESNIN ClementCHESNIN Clementhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5077py4web tests2023-11-08T14:41:23+01:00Mathieu Giraudpy4web tests
@duez: "l'appli est lance avec uwsgi et une db sqlite cree au lancement"
* exemple de tests avec pytest vidjil/server/py4web/apps/vidjil/tests/test_auth.py
* pour lancer tout les tests pytest present dans vidjil 'make unit' depuis vidj...
@duez: "l'appli est lance avec uwsgi et une db sqlite cree au lancement"
* exemple de tests avec pytest vidjil/server/py4web/apps/vidjil/tests/test_auth.py
* pour lancer tout les tests pytest present dans vidjil 'make unit' depuis vidjil/server/py4web
"Il faudrait un controlleur pour initialiser une bd"https://gitlab.inria.fr/vidjil/vidjil/-/issues/5066New scatterplot preset: locus by size2022-10-03T11:59:09+02:00Thonier FlorianNew scatterplot preset: locus by sizeA user ask to create a new preset "locus by size".
for the moment, they should do it by hand each time by selecting correct axis in lists.
Two options:
* Create a specific preset with this option
* Allow user to create their own prese...A user ask to create a new preset "locus by size".
for the moment, they should do it by hand each time by selecting correct axis in lists.
Two options:
* Create a specific preset with this option
* Allow user to create their own preset and "add" them locally by settings.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5051API serveur: doc/demo, com2024-01-19T18:50:04+01:00Mathieu GiraudAPI serveur: doc/demo, comMathieu GiraudMathieu Giraud