vidjil issueshttps://gitlab.inria.fr/vidjil/vidjil/-/issues2023-01-17T15:31:47+01:00https://gitlab.inria.fr/vidjil/vidjil/-/issues/5108Bug in download of results artifact files2023-01-17T15:31:47+01:00Thonier FlorianBug in download of results artifact filesSince commit 315b90140ddd03255cfc0e806366764c059f000b, when we try to download an analysis artifact (vidjil-algo log, fuse.log, ...), we always get the result file of the analysis `file.vidjil`.Since commit 315b90140ddd03255cfc0e806366764c059f000b, when we try to download an analysis artifact (vidjil-algo log, fuse.log, ...), we always get the result file of the analysis `file.vidjil`.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5105Run multiple pre/post fuse process in the same time2023-03-02T17:14:28+01:00Thonier FlorianRun multiple pre/post fuse process in the same timeAdd a way to make call to multiple script for prefuse/postfuse.Add a way to make call to multiple script for prefuse/postfuse.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5104Faciliter le process de création de compte2022-12-14T18:14:29+01:00Mathieu GiraudFaciliter le process de création de compte
Création / upload accordé automatique, mais attention à la sécurité / spam.
La première analyse resterait manuelle.
Après py4web.
Création / upload accordé automatique, mais attention à la sécurité / spam.
La première analyse resterait manuelle.
Après py4web.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5102Fuse, bad merge of sample warnings2023-01-12T15:31:57+01:00Thonier FlorianFuse, bad merge of sample warningsWarnings of sample is not correctly design. We are not able to reasign these warnings to the correct sample.
On the client side, we don't show these values for the moment.
Need to be improve on the both side
* [ ] Better merge of war...Warnings of sample is not correctly design. We are not able to reasign these warnings to the correct sample.
On the client side, we don't show these values for the moment.
Need to be improve on the both side
* [ ] Better merge of warn (include sample position related to warning)
* [ ] Show warnings on the client ==> #5103https://gitlab.inria.fr/vidjil/vidjil/-/issues/5095Report; Bug on grid graph splitted by locus after report generation2022-12-15T09:50:22+01:00Thonier FlorianReport; Bug on grid graph splitted by locus after report generationAfter a report generation, the locus split part on the right of the scatterplot disappear.
It reappear after a locus switch in the list panel.After a report generation, the locus split part on the right of the scatterplot disappear.
It reappear after a locus switch in the list panel.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5093report: use clone N region setting2022-11-23T17:10:52+01:00Thonier Florianreport: use clone N region settingUse the selected N region settings in the reportUse the selected N region settings in the reportWeb 2022.12https://gitlab.inria.fr/vidjil/vidjil/-/issues/5086Form does not allow blank password2022-11-08T21:19:18+01:00Joao MeidanisForm does not allow blank passwordThe update user page says, "To change user profile without changing the password, leave it blank', but in the HTML form the passowrd and confirmation fields are 'required', preventing the user from 'leaving them blank'.The update user page says, "To change user profile without changing the password, leave it blank', but in the HTML form the passowrd and confirmation fields are 'required', preventing the user from 'leaving them blank'.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5083Faire un point sur tSNE, puis doc2023-03-21T16:52:04+01:00Mathieu GiraudFaire un point sur tSNE, puis docWeb 2022.12https://gitlab.inria.fr/vidjil/vidjil/-/issues/5081Axe "Number of samples" ne fonctionne pas ?2022-11-04T13:42:36+01:00Mathieu GiraudAxe "Number of samples" ne fonctionne pas ?Web 2022.12https://gitlab.inria.fr/vidjil/vidjil/-/issues/5078py4web : impersonnate2023-12-08T15:08:19+01:00Mathieu Giraudpy4web : impersonnate
@duez: "il faut convertir les fonctions impersonate() et is_impersonating() de web2py et les ajouter a VidjilAuth.py"
@duez: "il faut convertir les fonctions impersonate() et is_impersonating() de web2py et les ajouter a VidjilAuth.py"Server - py4webCHESNIN ClementCHESNIN Clementhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5077py4web tests2023-11-08T14:41:23+01:00Mathieu Giraudpy4web tests
@duez: "l'appli est lance avec uwsgi et une db sqlite cree au lancement"
* exemple de tests avec pytest vidjil/server/py4web/apps/vidjil/tests/test_auth.py
* pour lancer tout les tests pytest present dans vidjil 'make unit' depuis vidj...
@duez: "l'appli est lance avec uwsgi et une db sqlite cree au lancement"
* exemple de tests avec pytest vidjil/server/py4web/apps/vidjil/tests/test_auth.py
* pour lancer tout les tests pytest present dans vidjil 'make unit' depuis vidjil/server/py4web
"Il faudrait un controlleur pour initialiser une bd"https://gitlab.inria.fr/vidjil/vidjil/-/issues/5070Bug in get_reads function from client/server2023-01-18T17:52:25+01:00Thonier FlorianBug in get_reads function from client/serverSince we don't keep `seq.fa` in major part of configuration, `get_reads`function don't work anymore. We need to return the result file.Since we don't keep `seq.fa` in major part of configuration, `get_reads`function don't work anymore. We need to return the result file.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5069Error of the downloading of vidjil result file from bd page (configuration nu...2022-11-10T17:59:09+01:00Thonier FlorianError of the downloading of vidjil result file from bd page (configuration number not defined)Link is not correctly formatted and include `config_id=-1` by default and not the current config number.Link is not correctly formatted and include `config_id=-1` by default and not the current config number.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5066New scatterplot preset: locus by size2022-10-03T11:59:09+02:00Thonier FlorianNew scatterplot preset: locus by sizeA user ask to create a new preset "locus by size".
for the moment, they should do it by hand each time by selecting correct axis in lists.
Two options:
* Create a specific preset with this option
* Allow user to create their own prese...A user ask to create a new preset "locus by size".
for the moment, they should do it by hand each time by selecting correct axis in lists.
Two options:
* Create a specific preset with this option
* Allow user to create their own preset and "add" them locally by settings.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5063nightmare en erreur2022-11-10T17:55:25+01:00Mikaël Salsonnightmare en erreurhttps://gitlab.inria.fr/vidjil/vidjil/-/jobs/2373884
Quelle cause ? (version trop ancienne ?)
cc @duezhttps://gitlab.inria.fr/vidjil/vidjil/-/jobs/2373884
Quelle cause ? (version trop ancienne ?)
cc @duezhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5054Axe "number of samples" ne fonctionne pas2022-11-10T17:13:12+01:00Mikaël SalsonAxe "number of samples" ne fonctionne pasL'axe pour connaitre le nombre de samples dans lequel apparait un clone ne fonctionne pas.
Exemple ici : https://app.vidjil.org/53266-25?
Erreur dans la console :
```
Uncaught TypeError: right-hand side of 'in' should be an object, ...L'axe pour connaitre le nombre de samples dans lequel apparait un clone ne fonctionne pas.
Exemple ici : https://app.vidjil.org/53266-25?
Erreur dans la console :
```
Uncaught TypeError: right-hand side of 'in' should be an object, got string
autofill https://app.vidjil.org/js/axis.js:159
compute https://app.vidjil.org/js/axis.js:134
changeSplitMethod https://app.vidjil.org/js/scatterPlot.js:1386
changeYaxis https://app.vidjil.org/js/scatterPlot_menu.js:459
onchange https://app.vidjil.org/js/scatterPlot_menu.js:149
```Web 2022.12https://gitlab.inria.fr/vidjil/vidjil/-/issues/5051API serveur: doc/demo, com2024-01-19T18:50:04+01:00Mathieu GiraudAPI serveur: doc/demo, comMathieu GiraudMathieu Giraudhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5047Erreurs No such record2022-06-29T13:50:25+02:00Mikaël SalsonErreurs No such recordMentionné ici : #5044
@flothoni : « 6 erreur `No such record`, un artefact des erreur de R2 de la semaine dernière ? »
C'est-à-dire ? Que peut-on faire pour prévenir ces erreurs ?
On a encore des erreurs en ce moment. Sur les 7 erre...Mentionné ici : #5044
@flothoni : « 6 erreur `No such record`, un artefact des erreur de R2 de la semaine dernière ? »
C'est-à-dire ? Que peut-on faire pour prévenir ces erreurs ?
On a encore des erreurs en ce moment. Sur les 7 erreurs actuellement sur le serveur il en a pour :
* 32358 (sample_set)
* 96766 (sequence_file)
* 102317 (sequence_file)
* 102387 (sequence_file)
* 102386 (sequence_file)
Pourquoi essaie-t-on d'accéder à ces éléments s'ils n'existent pas ?
D'où viennent ces identifiants ?https://gitlab.inria.fr/vidjil/vidjil/-/issues/5044Erreurs serveurs depuis le déploiement : MySQL server has gone away2022-06-29T13:50:56+02:00Mikaël SalsonErreurs serveurs depuis le déploiement : MySQL server has gone awayOn a une dizaine d'erreurs serveurs depuis le 18 juin.
Je n'ai pas investigué.
cc @duez @flothoniOn a une dizaine d'erreurs serveurs depuis le 18 juin.
Je n'ai pas investigué.
cc @duez @flothonihttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5040Pas de liste de clones ?2023-03-28T16:05:13+02:00Mathieu GiraudPas de liste de clones ?
https://app.vidjil.org/3241-25?
![image](/uploads/8ddc9f0e95407ea7655b0aecdb99cae5/image.png)
https://app.vidjil.org/3241-25?
![image](/uploads/8ddc9f0e95407ea7655b0aecdb99cae5/image.png)Web 2022.12Thonier FlorianThonier Florian