vidjil issueshttps://gitlab.inria.fr/vidjil/vidjil/-/issues2023-11-28T13:07:50+01:00https://gitlab.inria.fr/vidjil/vidjil/-/issues/5157API and Py4web: make it work2023-11-28T13:07:50+01:00THONIER FlorianAPI and Py4web: make it workFor the moment, API don't work out of the box:
* some forms have variation on dom ids
* Auth user is not directly accessible
* Use of generic.json as in web2py seem to be impossible (or at least modified and not documented).For the moment, API don't work out of the box:
* some forms have variation on dom ids
* Auth user is not directly accessible
* Use of generic.json as in web2py seem to be impossible (or at least modified and not documented).Server - py4webhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5155Follow-up from "Draft: Py4web; apply mulitple changes to backend server code."2023-11-06T15:04:09+01:00THONIER FlorianFollow-up from "Draft: Py4web; apply mulitple changes to backend server code."The following discussion from !1338 should be addressed:
- [ ] @fthonier started a [discussion](https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1338#note_862390):
> Supprimer aussi les règles associées.The following discussion from !1338 should be addressed:
- [ ] @fthonier started a [discussion](https://gitlab.inria.fr/vidjil/vidjil/-/merge_requests/1338#note_862390):
> Supprimer aussi les règles associées.Web 2023.10https://gitlab.inria.fr/vidjil/vidjil/-/issues/5140Show percentage by locus in addition that by sample2023-06-29T14:57:42+02:00THONIER FlorianShow percentage by locus in addition that by sampleA feature asked by some users: Be able to show percentage of clonotype inside his own locus in the client.
An alternative inside scatterplot exist with preset 17; locus by size, but not in list of clonotype.
Warning, a locus with only ...A feature asked by some users: Be able to show percentage of clonotype inside his own locus in the client.
An alternative inside scatterplot exist with preset 17; locus by size, but not in list of clonotype.
Warning, a locus with only few reads (wet lab/sequencing failure) can easily have a clonotype at a high level.Web 2023.10THONIER FlorianTHONIER Florianhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5139Document analysis configurations2023-06-21T15:11:48+02:00Mathieu GiraudDocument analysis configurationshttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5137Error of update on warings view2023-05-10T11:56:21+02:00THONIER FlorianError of update on warings viewA little mistake make the number of warnings for each sample not updated on the client.
Need an hotfixA little mistake make the number of warnings for each sample not updated on the client.
Need an hotfixhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5135Report: include alignment2023-05-23T17:13:40+02:00Mathieu GiraudReport: include alignment
By @Aurelie
- On several lines ?
- On one line (at some position)
By @Aurelie
- On several lines ?
- On one line (at some position)https://gitlab.inria.fr/vidjil/vidjil/-/issues/5128Missing image for diversity measures in the documentation2023-03-22T18:05:13+01:00Mikaël SalsonMissing image for diversity measures in the documentationSee here: https://www.vidjil.org/doc/user/#studying-diversity-and-overlap-indices
The image filename is `diversity_splitted_by_locus.png` but, indeed, it doesn't exist on the repository.
The reference to the figure was included in !1151...See here: https://www.vidjil.org/doc/user/#studying-diversity-and-overlap-indices
The image filename is `diversity_splitted_by_locus.png` but, indeed, it doesn't exist on the repository.
The reference to the figure was included in !1151.
@flothoni can you include this image?Thonier FlorianThonier Florianhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5125scatterplot; Add grahp update after a click on a scatterplot label2023-06-15T10:58:14+02:00THONIER Florianscatterplot; Add grahp update after a click on a scatterplot labelFor the moment, when we made a click on a scatterplot label, a selection is made on clonotype and an update of multiple view is done (at least scatterplot, clonotype list and aliger).
But the timeline graphic is seem to be not updated. ...For the moment, when we made a click on a scatterplot label, a selection is made on clonotype and an update of multiple view is done (at least scatterplot, clonotype list and aliger).
But the timeline graphic is seem to be not updated. Clonotype line is not shown as selected and a simple `m.update()` in console fix the issue.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5118Warnings view; unknown warnings are not shown2023-03-28T16:00:55+02:00THONIER FlorianWarnings view; unknown warnings are not shownIf I open a file from Nantes with warnings from their scripts, their are not shown in the warnings view.If I open a file from Nantes with warnings from their scripts, their are not shown in the warnings view.Web 2022.12https://gitlab.inria.fr/vidjil/vidjil/-/issues/5114similarity: être en Global2023-03-09T14:32:58+01:00Mathieu Giraudsimilarity: être en Globalhttps://gitlab.inria.fr/vidjil/vidjil/-/issues/5108Bug in download of results artifact files2023-01-17T15:31:47+01:00Thonier FlorianBug in download of results artifact filesSince commit 315b90140ddd03255cfc0e806366764c059f000b, when we try to download an analysis artifact (vidjil-algo log, fuse.log, ...), we always get the result file of the analysis `file.vidjil`.Since commit 315b90140ddd03255cfc0e806366764c059f000b, when we try to download an analysis artifact (vidjil-algo log, fuse.log, ...), we always get the result file of the analysis `file.vidjil`.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5105Run multiple pre/post fuse process in the same time2023-03-02T17:14:28+01:00Thonier FlorianRun multiple pre/post fuse process in the same timeAdd a way to make call to multiple script for prefuse/postfuse.Add a way to make call to multiple script for prefuse/postfuse.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5104Faciliter le process de création de compte2022-12-14T18:14:29+01:00Mathieu GiraudFaciliter le process de création de compte
Création / upload accordé automatique, mais attention à la sécurité / spam.
La première analyse resterait manuelle.
Après py4web.
Création / upload accordé automatique, mais attention à la sécurité / spam.
La première analyse resterait manuelle.
Après py4web.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5102Fuse, bad merge of sample warnings2023-01-12T15:31:57+01:00Thonier FlorianFuse, bad merge of sample warningsWarnings of sample is not correctly design. We are not able to reasign these warnings to the correct sample.
On the client side, we don't show these values for the moment.
Need to be improve on the both side
* [ ] Better merge of war...Warnings of sample is not correctly design. We are not able to reasign these warnings to the correct sample.
On the client side, we don't show these values for the moment.
Need to be improve on the both side
* [ ] Better merge of warn (include sample position related to warning)
* [ ] Show warnings on the client ==> #5103https://gitlab.inria.fr/vidjil/vidjil/-/issues/5095Report; Bug on grid graph splitted by locus after report generation2022-12-15T09:50:22+01:00Thonier FlorianReport; Bug on grid graph splitted by locus after report generationAfter a report generation, the locus split part on the right of the scatterplot disappear.
It reappear after a locus switch in the list panel.After a report generation, the locus split part on the right of the scatterplot disappear.
It reappear after a locus switch in the list panel.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5093report: use clone N region setting2022-11-23T17:10:52+01:00Thonier Florianreport: use clone N region settingUse the selected N region settings in the reportUse the selected N region settings in the reportWeb 2022.12https://gitlab.inria.fr/vidjil/vidjil/-/issues/5086Form does not allow blank password2022-11-08T21:19:18+01:00Joao MeidanisForm does not allow blank passwordThe update user page says, "To change user profile without changing the password, leave it blank', but in the HTML form the passowrd and confirmation fields are 'required', preventing the user from 'leaving them blank'.The update user page says, "To change user profile without changing the password, leave it blank', but in the HTML form the passowrd and confirmation fields are 'required', preventing the user from 'leaving them blank'.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5083Faire un point sur tSNE, puis doc2023-03-21T16:52:04+01:00Mathieu GiraudFaire un point sur tSNE, puis docWeb 2022.12https://gitlab.inria.fr/vidjil/vidjil/-/issues/5081Axe "Number of samples" ne fonctionne pas ?2022-11-04T13:42:36+01:00Mathieu GiraudAxe "Number of samples" ne fonctionne pas ?Web 2022.12https://gitlab.inria.fr/vidjil/vidjil/-/issues/5078py4web : impersonnate2023-12-08T15:08:19+01:00Mathieu Giraudpy4web : impersonnate
@duez: "il faut convertir les fonctions impersonate() et is_impersonating() de web2py et les ajouter a VidjilAuth.py"
@duez: "il faut convertir les fonctions impersonate() et is_impersonating() de web2py et les ajouter a VidjilAuth.py"Server - py4webCHESNIN ClementCHESNIN Clement