1. 04 Apr, 2019 5 commits
  2. 03 Apr, 2019 1 commit
  3. 02 Apr, 2019 13 commits
  4. 01 Apr, 2019 3 commits
  5. 22 Mar, 2019 3 commits
    • Mikaël Salson's avatar
      algo/tests: Update tests on representative · 903430f8
      Mikaël Salson authored
      Following the fix on min_cover_representative.
      The representative on small datasets may be longer.
      
      Thus we need to update those. There also some side effects:
      - V genes are less ambiguous (hence less warnings)
      - Consensus is longer (hence less warnings too)
      - Positions changes of end of V, J, CDR3…
      903430f8
    • Mikaël Salson's avatar
      algo/tests: Add test on min_cover_representative · 77e91ad1
      Mikaël Salson authored
      Checks previous commit
      77e91ad1
    • Mikaël Salson's avatar
      vidjil.cpp: Fix definition of min_cover_representative · 5c9296f9
      Mikaël Salson authored
      min_cover_representative should be seen as a strict minimum on the number of reads
      that can support a representative sequence.
      The purpose is to avoid a too low ABSOLUTE number of reads to define a representative.
      For the relative number, it is ratio_representative's role.
      
      Before, if we specified -r 100 we needed to have 100 corresponding
      k-mers which is very strict when a clone has just slightly more than
      100 reads
      5c9296f9
  6. 21 Mar, 2019 5 commits
  7. 14 Mar, 2019 2 commits
  8. 12 Mar, 2019 2 commits
  9. 11 Mar, 2019 4 commits
  10. 08 Mar, 2019 2 commits