1. 18 Jun, 2018 1 commit
  2. 29 Jan, 2018 1 commit
  3. 27 Nov, 2017 1 commit
  4. 31 Oct, 2017 1 commit
  5. 05 Jan, 2017 1 commit
  6. 05 Aug, 2016 1 commit
  7. 11 Mar, 2016 12 commits
  8. 01 Mar, 2016 2 commits
  9. 09 Nov, 2015 1 commit
  10. 18 Sep, 2015 1 commit
  11. 16 Sep, 2015 1 commit
  12. 03 Jul, 2015 2 commits
  13. 07 Feb, 2015 5 commits
  14. 03 Feb, 2015 3 commits
  15. 13 Jan, 2015 1 commit
  16. 01 Nov, 2014 1 commit
  17. 22 Oct, 2014 1 commit
    • Mikaël Salson's avatar
      Dynprog: Avoid millions (billions?) of small allocations · 66277bef
      Mikaël Salson authored
      Previously we created small arrays of three integers to store information for backtracking.
      Now we have a structure storing the same information so that we can allocate an array of structures.
      Therefore we can allocate the whole array at once, and we don't need anymore to have plenty of allocations of three integers
      66277bef
  18. 23 Sep, 2014 1 commit
  19. 20 Feb, 2014 1 commit
    • Mathieu Giraud's avatar
      Vidjil: release 2014.02 · 113ee8ee
      Mathieu Giraud authored
      	* Refactored main vidjil.cpp (core/windows.cpp, core/windowExtractor.cpp)
      	* Removed unused html output
      	* Better json output (core/json.cpp)
      	* Updated main stdout, with representative sequence for each clone
      	* Updated parameters for FineSegmenter (delta_max) and dynprog (substition cost)
      	* Bugs closed
      113ee8ee
  20. 07 Oct, 2013 1 commit
    • Mikaël Salson's avatar
      Vidjil: release 2013.10 · 2cbd3725
      Mikaël Salson authored
      	* Better heuristic, segments more reads (core/segment.cpp)
      	* Better and faster selection of representative read (vidjil.cpp, core/read_chooser.cpp)
      	* Better display of reason of non-segmenting reads
      	* New normalization against a standard (-Z) (core/labels.cpp)
      	* New experimental lazy_msa multiple aligner
      	* New .json output
      	* New unit tests
      	* Bugs closed
      2cbd3725
  21. 26 Apr, 2013 1 commit