Add IgReC support

See merge request !188

Feature g/3148 order germlines

Closes #3148

See merge request !193

Feature tg/3105 should

See merge request !190

Closes #3148.

Enforces #3148.
Note that this test uses the new capabilites provided by 'should.py'

From https://stackoverflow.com/a/43268377/4475279

'{...,...}' shell expansion does not work on all shells. See #3197.

Interaction between old 'e' and new 'b'.
See #3116.

You will be missed.

Feature a/3105 should

Closes #3197 and #3167

See merge request !185

8e79b8a

The for i in {x..y} construct is Bash-specific. An alternative would have
been for i in $(seq x y) but seq comes from GNU and is therefore not POSIX. A
good old-fashioned while does the job!

Fixes #3197

See #3197.

The previous test, with unicode characters, did not work well on some platforms.
See should#XXXX.

should-get-tests/: 3 tests with not-so-easy interaction with old 'e' and new 'b', escape some characters

Keeping in mind #3116, changing these 3 tests seems to be here a convenient way to go.

See #3106.
We keep in mind #3116.

It is now included in 'should.py'.

From http://gitlab.inria.fr/vidjil/should (2c8e3509a)
See #3105. Closes #3167.

Solves multi-upload bug

See merge request !192

id_dict was always increasing and was never reset. Thus the last sample were affected to
all the specific sample sets from the previous samples in the form.

Solves #3199

Uncluster inherit selection

Closes #1891 and #2837

See merge request !184

It is the first when clones are ordered by size. It may happen that this is not the case.
However the index of the cluster gives the cloneID that is the main clone of the cluster.

Added a test for that case.

See #2837.

Using QUnit, the test was not successful with nightmare.
Switching to functional test should solve the problem.

Does jshint know variable scope?

Fixes #2837

Method for unselecting (requires to update the list containin selection in
order).

Unit test it and also checks that selected sequences appear in the segmenter.

VidjilAuth.py: Unnest SQL queries

Closes #3169

See merge request !189

Feature a/3136 3137 warnings algo

Closes #3136 and #3137

See merge request !179

Discard dynamic programming optimisation with too many errors

Closes #3066

See merge request !174