1. 02 Feb, 2017 8 commits
  2. 01 Feb, 2017 8 commits
  3. 31 Jan, 2017 5 commits
  4. 30 Jan, 2017 9 commits
  5. 27 Jan, 2017 2 commits
    • Mikael Salson's avatar
      segment.cpp: Ensure that no in-frame stop codon prevents productivity · 5d910513
      Mikael Salson authored
      Refining productivity computation. In-frames stop codons will be detected.
      However if a sequence goes until the stop codon, it is normal to have an
      in-frame stop codon. But our sequence (usually?) don't go after the J gene.
      
      See #1824
      5d910513
    • Mikael Salson's avatar
      segment: CDR3/Junction JSON output could be falsely set · def760d8
      Mikael Salson authored
      When JUNCTIONstart or JUNCTIONend equaled 0, their values
      were not modified. But the CDR3/Junction are output in the JSON
      as long as the values of the variables are >= 0 (maybe this
      should also have been modified). Therefore we could have weird results
      with JUNCTIONstart=0 and JUNCTIONend=40.
      
      Tests added.
      def760d8
  6. 24 Jan, 2017 2 commits
  7. 23 Jan, 2017 1 commit
  8. 13 Jan, 2017 5 commits