1. 28 Apr, 2015 1 commit
  2. 07 Apr, 2015 1 commit
  3. 06 Apr, 2015 1 commit
    • Mathieu Giraud's avatar
      tests: remove TRD+ testing from trd-dd2-dd3.fa · 0e9a2171
      Mathieu Giraud authored
      TRDD2*01 is exactly 9 bp long. With SEED_9, we have in perfect Dd2 recombinations *one* matching k-mer.
      The Dd2 TRD+ indexes have a load of around 0.05% and 0.16% (due to Dd3 or J), and thus, with the current e-value
      computation, there is no chance to get a left e-value much smaller than 1e-3.
      0e9a2171
  4. 11 Mar, 2015 1 commit
  5. 03 Mar, 2015 1 commit
  6. 02 Mar, 2015 1 commit
  7. 01 Mar, 2015 3 commits
  8. 25 Feb, 2015 1 commit
  9. 21 Feb, 2015 1 commit
  10. 20 Feb, 2015 1 commit
  11. 06 Feb, 2015 1 commit
  12. 02 Feb, 2015 1 commit
  13. 15 Jan, 2015 1 commit
  14. 03 Dec, 2014 1 commit
  15. 22 Nov, 2014 1 commit
  16. 21 Nov, 2014 1 commit
  17. 07 Nov, 2014 1 commit
  18. 06 Nov, 2014 1 commit
  19. 05 Nov, 2014 3 commits
  20. 24 Oct, 2014 1 commit
  21. 22 Oct, 2014 1 commit
  22. 28 Aug, 2014 1 commit
  23. 16 Apr, 2014 1 commit
  24. 14 Apr, 2014 1 commit
  25. 01 Apr, 2014 1 commit
  26. 20 Mar, 2014 1 commit
  27. 20 Feb, 2014 1 commit
    • Mathieu Giraud's avatar
      Vidjil: release 2014.02 · 113ee8ee
      Mathieu Giraud authored
      	* Refactored main vidjil.cpp (core/windows.cpp, core/windowExtractor.cpp)
      	* Removed unused html output
      	* Better json output (core/json.cpp)
      	* Updated main stdout, with representative sequence for each clone
      	* Updated parameters for FineSegmenter (delta_max) and dynprog (substition cost)
      	* Bugs closed
      113ee8ee
  28. 07 Oct, 2013 1 commit
    • Mikaël Salson's avatar
      Vidjil: release 2013.10 · 2cbd3725
      Mikaël Salson authored
      	* Better heuristic, segments more reads (core/segment.cpp)
      	* Better and faster selection of representative read (vidjil.cpp, core/read_chooser.cpp)
      	* Better display of reason of non-segmenting reads
      	* New normalization against a standard (-Z) (core/labels.cpp)
      	* New experimental lazy_msa multiple aligner
      	* New .json output
      	* New unit tests
      	* Bugs closed
      2cbd3725
  29. 03 Jul, 2013 1 commit
    • Mathieu Giraud's avatar
      Vidjil: release 2013.07 · de4c48e0
      Mathieu Giraud authored
      	* New selection of representative read (core/read_chooser.cpp)
      	* Faster spaced seed computation (core/tools.cpp)
      	* New unit tests
      	* Bugs closed
      de4c48e0
  30. 26 Apr, 2013 1 commit