- 11 Mar, 2019 7 commits
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Mathieu Giraud authored
See #3785.
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Mathieu Giraud authored
See #3785.
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Mathieu Giraud authored
Bye-bye -FaW, see #3785.
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Mathieu Giraud authored
See #3782 and #3295.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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- 08 Mar, 2019 7 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
See #3295.
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Mathieu Giraud authored
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Mathieu Giraud authored
See #3295.
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Mathieu Giraud authored
Use the new option names. Remove also '--trim 0' options used in some tests. See #3295.
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Vidjil Team authored
Following passionate discussions (!245) : - add many long option names, using updated terms - deprecate 11 short options, including many rare options coming form ancient times - reorder options and bikeshed some help texts See #3295.
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Mathieu Giraud authored
Ensure tab after name See merge request !430
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- 07 Mar, 2019 2 commits
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Mikaël Salson authored
On each line we should have a + or - when segmented or an exclamation mark when unsegmented. A tab should always exist at least between the sequence name and the VDJ designation.
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Mikaël Salson authored
This should ease parsing the output.
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- 06 Mar, 2019 14 commits
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Mathieu Giraud authored
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Mikaël Salson authored
-c designations Closes #3772 See merge request !429
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Mikaël Salson authored
Better CLI11 error messages, link to documentation See merge request !428
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
see also should#31
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Mathieu Giraud authored
Add display the error message improved in the previous commit. see #3775
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Mathieu Giraud authored
close #3772.
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Mathieu Giraud authored
define and use failure_message_doc(), taking inspiration from FailureMessage::simple() see #3775
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Mathieu Giraud authored
See #3772.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
See #3772.
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Mathieu Giraud authored
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- 05 Mar, 2019 10 commits
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Mikaël Salson authored
Feature cs/3722 browsers from env or file See merge request !423
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Mikaël Salson authored
This cannot be properly tested in test_segmenter_page_errors.rb as we don't have a menu there
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Mikaël Salson authored
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Mathieu Giraud authored
See #3722 and #3701.
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Mathieu Giraud authored
tests/launch_functional_tests: select browsers from environment variable or from 'tested-browser' file Partially revert 02ca0a24. We want both to agnostically use 'launch_functional_tests', but also to be able to follow in a versioned file the supported browsers.
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Mikaël Salson authored
Use a fixed version of web2py Closes #3605 See merge request !419
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Mathieu Giraud authored
Update e-value on SEG_METHOD_ONE with Aho Closes #3773 See merge request !426
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Mathieu Giraud authored
was done twice in 40aef950 and 556d8b0b, but git merge did not understood what we meant there ;-)
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Mathieu Giraud authored
see #3773
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Mathieu Giraud authored
Random read sample for representative Closes #3764 See merge request !422
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