Commits · 4126839739c67a675bce154ba8e5a734367cc970 · vidjil / vidjil

10 Jan, 2019 4 commits
- js/lib/info.txt: reindent, clean · 41268397
  Mathieu Giraud authored Jan 10, 2019
  
  41268397
- js/lib/info.txt: @version details for some libs · bc5edcbf
  Mathieu Giraud authored Jan 10, 2019
  
  bc5edcbf
- js/lib: update qunit-tap to 1.5.1 · 7a4793b2
  Mathieu Giraud authored Jan 10, 2019
```
No changes !
```
  7a4793b2
- js/lib: update require.js to 2.3.6 · 91e945c1
  Mathieu Giraud authored Jan 09, 2019
```
Closes #3632.
```
  91e945c1
09 Jan, 2019 3 commits
- tests: update · 0a7a54d0
  Mathieu Giraud authored Jan 09, 2019
  
  0a7a54d0
- js/lib: update qunit to 2.9.1 · 2158f636
  Mathieu Giraud authored Jan 09, 2019
  
  2158f636
- js/lib: update jquery to 3.3.1 · 747c2eb9
  Mathieu Giraud authored Jan 09, 2019
  
  747c2eb9
31 Dec, 2018 4 commits
- Merge branch 'feature-c/normalization' into 'dev' · e96e6d5e
  Mathieu Giraud authored Dec 31, 2018
```
normalization : fix tests, show buttons when needed

Closes #3661

See merge request !382
```
  e96e6d5e
- css: norm_button · e9d8cf63
  Mathieu Giraud authored Dec 31, 2018
  
  e9d8cf63
- js/model.js, tests: fix a broken test · 9526181d
  Mathieu Giraud authored Dec 31, 2018
  
  9526181d
- js/model.js: show NORM_{EXPECTED,EXTERNAL} buttons only where needed · b08e0b0f
  Mathieu Giraud authored Dec 31, 2018
```
Closes #3661.
```
  b08e0b0f
28 Dec, 2018 9 commits
- Merge branch 'feature-c/normalization' into 'dev' · f0fdb02a
  Mathieu Giraud authored Dec 28, 2018
```
Normalization, details

Closes #3662

See merge request !381
```
  f0fdb02a
- js/model.js: jshint · 394fec68
  Mathieu Giraud authored Dec 28, 2018
  
  394fec68
- tests: add test, getPrintableSize() and normalized_reads · 2da7c4fa
  Mathieu Giraud authored Dec 28, 2018
  
  2da7c4fa
- js/clone.js: getPrintableSize(), more robust · 22537194
  Mathieu Giraud authored Dec 28, 2018
  
  22537194
- js/{clone,segmenter}.js: display both raw and normalized reads on stats and export, when applicable · c104d5ac
  Mathieu Giraud authored Dec 28, 2018
```
see #3650
```
  c104d5ac
- js/clone.js: getPrintableSize() display both raw and normalized reads when applicable · e9ba8a2b
  Mathieu Giraud authored Dec 28, 2018
```
see #3650
```
  e9ba8a2b
- clone.js: getHtmlInfo(), display normalized_reads when applicable · 42aa9ea6
  Mathieu Giraud authored Dec 28, 2018
```
closes #3662
```
  42aa9ea6
- js/{model,clone}.js: clone.getRawReads(), bypass normalization · 8cce9045
  Mathieu Giraud authored Dec 28, 2018
```
see #3662 and #3650.
```
  8cce9045
- browser/index.html: put back normalization_list, but in devel mode · de61fc3f
  Mathieu Giraud authored Dec 28, 2018
```
See #3666.
```
  de61fc3f
27 Dec, 2018 18 commits
- Merge branch 'feature-c/3644-3645-normalization' into 'dev' · 58d7baf2
  Mathieu Giraud authored Dec 27, 2018
```
Refactor and extend normalization

See merge request !379
```
  58d7baf2
- tests: temporary comment a failing test · 56609a4c
  Mathieu Giraud authored Dec 27, 2018
  
  56609a4c
- js/clone.js: bikeshed icon for normalization · a9b32fa0
  Mathieu Giraud authored Dec 27, 2018
```
see #3663
```
  a9b32fa0
- browser/index.html: normalization, bikeshed menu elements · 976da3bd
  Mathieu Giraud authored Dec 27, 2018
```
see #3663.
```
  976da3bd
- tests: update · 3e5ee2c6
  Mathieu Giraud authored Dec 27, 2018
  
  3e5ee2c6
- js/clone.js: use m.normalize_reads()/m.normalize() when needed · 58075d6f
  Mathieu Giraud authored Dec 27, 2018
```
only clone.getReads() uses m.normalize_reads()

see #3645
```
  58075d6f
- js/model.js: model.normalize_reads() separated from model.normalize() · 086d168d
  Mathieu Giraud authored Dec 27, 2018
```
The former is on reads, the latter on ratios.
See #3644 and #3645.
```
  086d168d
- js/model.js: simplify m.normalize() · 7be1280e
  Mathieu Giraud authored Dec 27, 2018
  
  7be1280e
- js/model.js: NORM_EXTERNAL, round after division · 846b0abb
  Mathieu Giraud authored Dec 27, 2018
  
  846b0abb
- tests: update and add tests · 68ada44e
  Thonier Florian authored Dec 27, 2018
  
  68ada44e
- browser/index.html: normalization · da888a39
  Thonier Florian authored Dec 27, 2018
```
see #3644 and #3645
```
  da888a39
- js/model.js: at initialization, trigger NORM_EXTERNAL when needed · f37fb84f
  Thonier Florian authored Dec 27, 2018
```
see #3645
```
  f37fb84f
- js/clone.js: updateCloneTagIcon() · e324ed75
  Thonier Florian authored Dec 27, 2018
  
  e324ed75
- js/model.js: new normalization NORM_EXTERNAL · 74ccefcb
  Thonier Florian authored Dec 27, 2018
```
see #3645
```
  74ccefcb
- js/export.js, js/graph.js: use refactored m.normalize() · a79c3235
  Thonier Florian authored Dec 27, 2018
```
See #3644.
```
  a79c3235
- js/clone.js: use refactored m.normalize() · 997d754a
  Thonier Florian authored Dec 27, 2018
```
see #3644
```
  997d754a
- js/model.js: refactor normalization · 20599101
  Thonier Florian authored Dec 27, 2018
  
  20599101
- .gitignore: update · a2c6a194
  Thonier Florian authored Dec 27, 2018
  
  a2c6a194
12 Dec, 2018 2 commits
- Merge branch 'feature-g/3656-gitlab-deploy-germlines' into 'dev' · 3425e544
  Mathieu Giraud authored Dec 12, 2018
```
Add germline build and deploy on prod server

Closes #3656

See merge request !373
```
  3425e544
- .gitlab-ci.yml: bikeshed date format · 22eb9148
  Mathieu Giraud authored Dec 12, 2018
  
  22eb9148