1. 13 Jul, 2018 1 commit
  2. 12 Jul, 2018 1 commit
    • Mikaël Salson's avatar
      germline, algo/tests: New germlines taken into account · a79ff8de
      Mikaël Salson authored
      Changes in IMGT:
      - Addition of 8 IGHV genes and alleles (8 F):IGHV1-8*03, IGHV1-69*15, IGHV1-69*16, IGHV2-26*02, IGHV2-26*03, IGHV2-70*15, IGHV2-70*16, IGHV2-70*17.
      - Update of reference sequences of IGHV1-45*03 and IGHV2-70*04 (partial sequences were replaced with complete V-REGION).
      - TRAJ13*02 reference sequence is AB258131.
      
      See http://www.imgt.org/IMGTgenedbdoc/dataupdates.html
      
      Other changes in MD5 should be due to changes in headers but this is not always true.
      - IGKV2D-26*02 has gained 2 nucleotides at its end
      - TRGV2*03 has appeared
      
      We note that the new IGHV genes allow to diminish the number of ambiguous k-mers on S22 dataset
      a79ff8de
  3. 15 Mar, 2018 1 commit
  4. 17 Sep, 2017 1 commit
  5. 15 Feb, 2017 1 commit
  6. 09 Feb, 2017 1 commit
    • Mathieu Giraud's avatar
      germline: update germline_id · 5ac869aa
      Mathieu Giraud authored
      New .tar.gz with the new germline/directory structure.
      
      IMGT changes:
       - removal of IGLJ4*01, IGLJ5*01, IGLJ7*01
       - removal of IGHV3-23D*02
       - changes in all fasta headers (no more ‘rev-compl’)
      
      Fixes #1766.
      5ac869aa
  7. 01 Mar, 2016 1 commit
  8. 19 Feb, 2016 2 commits
  9. 03 Feb, 2016 1 commit
    • Mikaël Salson's avatar
      germline: changes in IMGT germlines · 526beeb8
      Mikaël Salson authored
      Changes in IGHV:
      1. Three new genes (IGHV3-23D*02, IGHV3-30-5*01 and
         IGHV3-30-5*02). Welcome on board.
      2. One gene deleted (IGHV4-28*05). You left us too early,
         we had good time together…
      3. One gene (IGHV3-30-3*01) increased by two nucleotides. Congratulations!
      
      Functionality changes in two genes in IGLV (IGLV10-54*03) and TRAV
      (TRAV11*01).
      526beeb8
  10. 15 May, 2015 2 commits
  11. 11 May, 2015 1 commit
    • Mikaël Salson's avatar
      germline: Changes in IMGT germlines. · 9ef93faa
      Mikaël Salson authored
      4 genes added in IGHV (welcome on board): IGHV3-30-22, IGHV3-30-33, IGHV3-30-42, IGHV3-30-52.
      5 IGKV genes removed (IGKV3-NL[1-5]) and 2 added (IGKV3D-11, IGKV3D-20)
      9ef93faa
  12. 03 Apr, 2015 1 commit
  13. 15 Jan, 2015 1 commit