1. 02 Apr, 2019 1 commit
  2. 22 Mar, 2019 1 commit
    • Mikael Salson's avatar
      vidjil.cpp: Fix definition of min_cover_representative · 5c9296f9
      Mikael Salson authored
      min_cover_representative should be seen as a strict minimum on the number of reads
      that can support a representative sequence.
      The purpose is to avoid a too low ABSOLUTE number of reads to define a representative.
      For the relative number, it is ratio_representative's role.
      
      Before, if we specified -r 100 we needed to have 100 corresponding
      k-mers which is very strict when a clone has just slightly more than
      100 reads
      5c9296f9
  3. 21 Mar, 2019 2 commits
  4. 12 Mar, 2019 1 commit
  5. 11 Mar, 2019 2 commits
  6. 08 Mar, 2019 3 commits
  7. 06 Mar, 2019 5 commits
  8. 05 Mar, 2019 4 commits
  9. 04 Mar, 2019 1 commit
  10. 28 Feb, 2019 3 commits
  11. 26 Nov, 2018 1 commit
  12. 26 Oct, 2018 1 commit
  13. 19 Oct, 2018 1 commit
  14. 18 Oct, 2018 2 commits
  15. 16 Oct, 2018 7 commits
  16. 02 Oct, 2018 1 commit
    • Mikael Salson's avatar
      algo/vidjil: Change default for -Z · af613205
      Mikael Salson authored
      With #3225 we don't have a fixed limit on the number of sequences to get.
      We will get all the sequences that have a common number of k-mers close to the first sequence.
      af613205
  17. 20 Jul, 2018 2 commits
  18. 17 Jul, 2018 1 commit
  19. 13 Jul, 2018 1 commit