Commit fa3f934a authored by Cyprien Borée's avatar Cyprien Borée

add should-get test for -R

For more informations, see #1409.
parent ed8ef291
Pipeline #34198 passed with stages
in 45 minutes and 44 seconds
!REQUIRES: python $VIDJIL_DIR/tools/check_python_version.py
!LAUNCH: $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS -R 3 -c segment -x 1 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta > /dev/null ; cat out/Stanford_S22.vidjil | python $VIDJIL_DIR/tools/format_json.py -1
$ Presence of alternative:
1: "3alt"
1: "name": "IGHJ4.02"
1: "name": "IGHJ4.01"
1: "name": "IGHJ5.01"
1: "4alt"
1: "name": "IGHD3-22.01"
1: "name": "IGHD3-10.02"
1: "name": "IGHD3-10.01"
1: "5alt"
1: "name": "IGHV3-48.01"
1: "name": "IGHV3-48.02"
1: "name": "IGHV3-48.04"
$ The correct number of "name" field
w13:"name"
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