Commit f7c71baf authored by Mathieu Giraud's avatar Mathieu Giraud

tests: update and add tests on LIL-L4

See #2635, but also #3027.
parent ee762649
Pipeline #15449 passed with stages
in 21 minutes and 37 seconds
......@@ -2,11 +2,11 @@
# Test examples embedded in './vidjil-algo -h'
# Run 6 times (-h + 5 examples)
6:vidjil-algo -- V.D.J recombinations analysis
# Run 6 times (-h + 6 examples)
7:vidjil-algo -- V.D.J recombinations analysis
# '-c clone', two times
2: end of clones
# '-c clone', three times
3: end of clones
# '-c windows'
1:Extracting windows
......@@ -17,3 +17,7 @@
# '-c germlines'
1:Discovering germlines
1:max.*kmer
# LIL-L4, detects first clone
1:Clone .001 .* 160039 reads
1:clone-001--TRG.* TRGV9.01 0/AC/1 TRGJ1.02
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