Commit f6a062ab authored by Mathieu Giraud's avatar Mathieu Giraud

doc/vidjil-algo.md: -g germline/homo-sapiens.g

No need to advertise the old '-g germline'.
parent fb61300d
......@@ -794,7 +794,7 @@ clustering such reads into clones, and further analyzing the clones.
```
``` bash
./vidjil-algo -g germline -2 -3 -d demo/Stanford_S22.fasta
./vidjil-algo -g germline/homo-sapiens.g -2 -3 -d demo/Stanford_S22.fasta
# Detects for each read the best locus, including an analysis of incomplete/unusual and unexpected recombinations
# Cluster the reads into clones, again based on windows overlapping the detected CDR3s.
# Assign the VDJ genes (including multiple D) and try to detect the CDR3 of each clone.
......@@ -804,7 +804,7 @@ clustering such reads into clones, and further analyzing the clones.
## Sorting reads from whole RNA-Seq or capture datasets
``` bash
./vidjil-algo -g germline -2 -U demo/Stanford_S22.fasta
./vidjil-algo -g germline/homo-sapiens.g -2 -U demo/Stanford_S22.fasta
# Detects for each read the best locus, including an analysis of incomplete/unusual and unexpected recombinations
# Cluster the reads into clones, again based on windows overlapping the detected CDR3s.
# Assign the VDJ genes and try to detect the CDR3 of each clone.
......
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