Commit f1e02c4e authored by Mathieu Giraud's avatar Mathieu Giraud

tests: test several -g options (and isotype detection)

parent b221c533
!LAUNCH: $VIDJIL_DIR/vidjil -g $VIDJIL_DIR/germline -g $VIDJIL_DIR/germline/isotypes.data -i $VIDJIL_DIR/data/isotypes.fa
$ Segment the three reads
1: junction detected in 3 reads
$ Segment one read on IGH (first -g option)
1: IGH .* -> .* 1
$ Segment two reads on IgVC/IgJC (second -g option)
1: IgVC .* -> .* 1
1: IgJC .* -> .* 1
>IGHV1-2*03 IGHJ1*01
agctgagcaggctgagatctgacgacacggccgtgtattactgtgcgagaga
gctgaatacttccagcactggggccagggcaccctggtcaccgtctcctcag
>IGHJ1*01 IGHC=M*01
gctgaatacttccagcactggggccagggcaccctggtcaccgtctcctcag
gggagtgcatccgccccaacccttttccccctcgtctcctgtgagaattccc
>IGHV1-2*03 IGHG1*04
agctgagcaggctgagatctgacgacacggccgtgtattactgtgcgagaga
gggcagccccgagaaccacaggtgtacaccctgcccccatcccgggatgagc
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