From edf7cd8327e690d1b58514d20ee7c4ac1aa7d633 Mon Sep 17 00:00:00 2001 From: Mikael Salson Date: Mon, 22 Jul 2019 17:57:23 +0200 Subject: [PATCH] vidjil-format.md: Do not use 'seq' with CDR3 or junction --- doc/vidjil-format.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/doc/vidjil-format.md b/doc/vidjil-format.md index 5da25412c..978e4a249 100644 --- a/doc/vidjil-format.md +++ b/doc/vidjil-format.md @@ -317,6 +317,8 @@ In the `.analysis` file, this section is intended to describe some specific clon // // JUNCTION//CDR3 should be stored that way (in fields called "junction" of "cdr3"), // its productivity must be stored in a boolean field called "productive". + // "seq" field should not be filled for cdr3 or junction (it is extracted from the sequence itself). + // However a "aa" field may be used to give the amino-acid translation of the cdr3 or junction. "somefeature": { "start": 56, "stop": 61, "seq": "ACTGTA", "val": 145.7, "info": "analyzed with xyz" }, // Numerical or textual features concerning all the sequence or its analysis (such as 'evalue') -- 2.22.0