Commit edf7cd83 authored by Mikaël Salson's avatar Mikaël Salson

vidjil-format.md: Do not use 'seq' with CDR3 or junction

parent c4b7c8ba
Pipeline #88090 passed with stages
in 6 minutes and 6 seconds
......@@ -317,6 +317,8 @@ In the `.analysis` file, this section is intended to describe some specific clon
//
// JUNCTION//CDR3 should be stored that way (in fields called "junction" of "cdr3"),
// its productivity must be stored in a boolean field called "productive".
// "seq" field should not be filled for cdr3 or junction (it is extracted from the sequence itself).
// However a "aa" field may be used to give the amino-acid translation of the cdr3 or junction.
"somefeature": { "start": 56, "stop": 61, "seq": "ACTGTA", "val": 145.7, "info": "analyzed with xyz" },
// Numerical or textual features concerning all the sequence or its analysis (such as 'evalue')
......
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