Commit ea66e02c authored by Mikael Salson's avatar Mikael Salson

germline: TRDD/TRAJ recombinations

parent 0508d34e
......@@ -198,6 +198,7 @@ void MultiGermline::build_incomplete_set(string path, int max_indexing)
// Should parse 'data/germlines.data'
// VdJa
add_germline(new Germline("VdJa", 'a', path + "/TRDV.fa", path + "/TRDD.fa", path + "/TRAJ.fa", -10, 80, max_indexing), SEED_S13);
add_germline(new Germline("VdJa", 'a', path + "/TRDD_upstream.fa", "", path + "/TRAJ.fa", -10, 80, max_indexing), SEED_S13);
// DD2-DD3
add_germline(new Germline("TRD+", 'd', path + "/TRDD2-01.fa", "", path + "/TRDJ.fa", -10, 60, max_indexing), SEED_9);
......
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