Commit e8e5485b authored by Mikaël Salson's avatar Mikaël Salson

fuse.py moved from server/ to tools/

parent e9b73245
...@@ -32,7 +32,7 @@ unit: all ...@@ -32,7 +32,7 @@ unit: all
pytests: pytests:
@echo "*** Launching python tests..." @echo "*** Launching python tests..."
python server/fuse.py --test x python tools/fuse.py --test x
@echo "*** All python tests passed" @echo "*** All python tests passed"
should: all should: all
......
!LAUNCH: python ../../server/fuse.py ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ; cat fused.vidjil !LAUNCH: python ../../tools/fuse.py ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ; cat fused.vidjil
$ Fuse the three files $ Fuse the three files
2: ListWindows: .1000, 1000, 1000. 2: ListWindows: .1000, 1000, 1000.
......
!LAUNCH: ../../vidjil -G ../../germline/IGH ../../data/Stanford_S22.fasta ; python ../../server/fuse.py out/Stanford_S22.vidjil out/Stanford_S22.vidjil -o out/fused.data ; cat out/fused.data | sh format-json.sh !LAUNCH: ../../vidjil -G ../../germline/IGH ../../data/Stanford_S22.fasta ; python ../../tools/fuse.py out/Stanford_S22.vidjil out/Stanford_S22.vidjil -o out/fused.data ; cat out/fused.data | sh format-json.sh
$ Points list $ Points list
f1:"point": [ "", "" ] f1:"point": [ "", "" ]
......
...@@ -30,7 +30,7 @@ database computes these .vidjil files. ...@@ -30,7 +30,7 @@ database computes these .vidjil files.
Otherwise, such .vidjil files can be obtained: Otherwise, such .vidjil files can be obtained:
- from the command-line version of Vidjil (starting from - from the command-line version of Vidjil (starting from
=.fasta= or =.fastq= files, see [[http://git.vidjil.org/blob/master/doc/algo.org][algo.org]]). =.fasta= or =.fastq= files, see [[http://git.vidjil.org/blob/master/doc/algo.org][algo.org]]).
To gather several .vidjil files, you have to use the [[http://git.vidjil.org/blob/master/server/fuse.py][fuse.py]] script To gather several .vidjil files, you have to use the [[http://git.vidjil.org/blob/master/tools/fuse.py][fuse.py]] script
- or by post-processing of other V(D)J analysis pipelines (contact us - or by post-processing of other V(D)J analysis pipelines (contact us
if you are interested) if you are interested)
......
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