Commit e6034a24 authored by Thonier Florian's avatar Thonier Florian

flash2; make mod in server conf

link to #3911
parent c5bd67d6
Pipeline #77544 passed with stages
in 7 minutes and 6 seconds
......@@ -868,6 +868,7 @@ def run_pre_process(pre_process_id, sequence_file_id, clean_before=True, clean_a
cmd = cmd.replace( "&file2&", defs.DIR_SEQUENCES + sequence_file.data_file2)
cmd = cmd.replace( "&result&", output_file)
cmd = cmd.replace("&pear&", defs.DIR_PEAR)
cmd = cmd.replace("&flash2&", defs.DIR_FLASH2)
# Example of template to add some preprocess shortcut
# cmd = cmd.replace("&preprocess_template&", defs.DIR_preprocess_template)
# Where &preprocess_template& is the shortcut to change and
......
......@@ -44,6 +44,7 @@ DIR_FUSE = '../../tools'
DIR_MIXCR = '../../'
DIR_IGREC = '../../'
DIR_PEAR = '../../'
DIR_FLASH2 = '../../'
DIR_CLONEDB = '../../../clonedb'
### Directory that store the germlines used by Vidjil
......
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