Commit e2c1e5d2 authored by Mathieu Giraud's avatar Mathieu Giraud

doc/tutorial: update links

See #3364.
parent b36fbc07
...@@ -64,7 +64,7 @@ d'information sur l'échantillon en cours. ...@@ -64,7 +64,7 @@ d'information sur l'échantillon en cours.
TRG~? Les lignes commençant par UNSEG donnent les raisons pour lesquelles TRG~? Les lignes commençant par UNSEG donnent les raisons pour lesquelles
certains reads n'ont pas été analysées. certains reads n'ont pas été analysées.
Vous pouvez voir ce que signifient ces raisons dans la documentation en ligne de l'algorithme : Vous pouvez voir ce que signifient ces raisons dans la documentation en ligne de l'algorithme :
\href{http://www.vidjil.org/doc/algo.html\#unsegmentation}{vidjil.org/doc/algo.html\#unsegmentation} \href{http://www.vidjil.org/doc/vidjil-algo\#unsegmentation-causes}{vidjil.org/doc/vidjil-algo\#unsegmentation-causes
} }
\question{Quelles sont les principales causes expliquant que les reads n'ont pas \question{Quelles sont les principales causes expliquant que les reads n'ont pas
été analysées~? Regardez aussi la longueur moyenne des reads non été analysées~? Regardez aussi la longueur moyenne des reads non
......
...@@ -25,7 +25,7 @@ Do not open the \textit{Demo LIL-L3 (analyzed)} patient: this one contains the c ...@@ -25,7 +25,7 @@ Do not open the \textit{Demo LIL-L3 (analyzed)} patient: this one contains the c
analysis. analysis.
The Vidjil web application opens.} The Vidjil web application opens.}
This patient (patient 063 from \href{http://dx.doi.org/10.1016/j.leukres.2016.11.009}{Lille study on the feasibility of MRD using HTS}) suffering T-ALL has one diagnosis sample, This patient (patient 063 from \href{http://dx.doi.org/10.1016/j.leukres.2016.11com.009}{Lille study on the feasibility of MRD using HTS}) suffering T-ALL has one diagnosis sample,
with dominant clones both in IGH and TRG, with dominant clones both in IGH and TRG,
and four follow-up samples, including a relapse. and four follow-up samples, including a relapse.
...@@ -62,7 +62,7 @@ The lines starting with \texttt{UNSEG} display the reasons why some reads have ...@@ -62,7 +62,7 @@ The lines starting with \texttt{UNSEG} display the reasons why some reads have
not been analyzed. not been analyzed.
You can see what those reasons mean in the online documentation of the You can see what those reasons mean in the online documentation of the
algorithm: \href{http://www.vidjil.org/doc/algo.html\#unsegmentation}{vidjil.org/doc/algo.html\#unsegmentation algorithm: \href{http://www.vidjil.org/doc/vidjil-algo\#unsegmentation-causes}{vidjil.org/doc/vidjil-algo\#unsegmentation-causes
} }
\question{What are the major causes explaining the reads have not been \question{What are the major causes explaining the reads have not been
analyzed? Also have a look at the average read lengths of these causes. Do analyzed? Also have a look at the average read lengths of these causes. Do
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