Commit e2c1e5d2 authored by Mathieu Giraud's avatar Mathieu Giraud

doc/tutorial: update links

See #3364.
parent b36fbc07
......@@ -64,7 +64,7 @@ d'information sur l'échantillon en cours.
TRG~? Les lignes commençant par UNSEG donnent les raisons pour lesquelles
certains reads n'ont pas été analysées.
Vous pouvez voir ce que signifient ces raisons dans la documentation en ligne de l'algorithme :
\href{http://www.vidjil.org/doc/algo.html\#unsegmentation}{vidjil.org/doc/algo.html\#unsegmentation}
\href{http://www.vidjil.org/doc/vidjil-algo\#unsegmentation-causes}{vidjil.org/doc/vidjil-algo\#unsegmentation-causes
}
\question{Quelles sont les principales causes expliquant que les reads n'ont pas
été analysées~? Regardez aussi la longueur moyenne des reads non
......
......@@ -25,7 +25,7 @@ Do not open the \textit{Demo LIL-L3 (analyzed)} patient: this one contains the c
analysis.
The Vidjil web application opens.}
This patient (patient 063 from \href{http://dx.doi.org/10.1016/j.leukres.2016.11.009}{Lille study on the feasibility of MRD using HTS}) suffering T-ALL has one diagnosis sample,
This patient (patient 063 from \href{http://dx.doi.org/10.1016/j.leukres.2016.11com.009}{Lille study on the feasibility of MRD using HTS}) suffering T-ALL has one diagnosis sample,
with dominant clones both in IGH and TRG,
and four follow-up samples, including a relapse.
......@@ -62,7 +62,7 @@ The lines starting with \texttt{UNSEG} display the reasons why some reads have
not been analyzed.
You can see what those reasons mean in the online documentation of the
algorithm: \href{http://www.vidjil.org/doc/algo.html\#unsegmentation}{vidjil.org/doc/algo.html\#unsegmentation
algorithm: \href{http://www.vidjil.org/doc/vidjil-algo\#unsegmentation-causes}{vidjil.org/doc/vidjil-algo\#unsegmentation-causes
}
\question{What are the major causes explaining the reads have not been
analyzed? Also have a look at the average read lengths of these causes. Do
......
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