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vidjil
vidjil
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e229d617
Commit
e229d617
authored
Mar 04, 2015
by
Mathieu Giraud
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vidjil: release 2015.03
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e229d617
This changelog concerns the algorithmic part (C++) of Vidjil.
2015-0
2-XX
The Vidjil Team
2015-0
3-04
The Vidjil Team
* Better multi-germline analysis (-g), returning the best locus for each read (core/segment.cpp)
The incomplete rearrangement analysis (-i) can now safely be used.
The speed of this multi-germline analysis will be improved in a next release.
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@@ -9,7 +9,7 @@ This changelog concerns the algorithmic part (C++) of Vidjil.
* Included tools (tools/*.py) to process .vidjil files
* New statistics on the number of clones (core/germline.cpp)
* New experimental CDR3 detection (-3). We still advise to use IMGT/V-QUEST for better and complete results.
* Better debug option -
u
(.affect), especially in the case of multi-germline analysis
* Better debug option -
K
(.affect), especially in the case of multi-germline analysis
* Refactored dynamic programming computations (core/dynprog.cpp), experimental affine gaps
* Removed unused code parts as well as some files
* Streamlined flag processing in Makefiles
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