Commit deda88a2 authored by Mathieu Giraud's avatar Mathieu Giraud

doc/vidjil-format.md: converted from doc/format-analysis.org + details

parent 2f952c41
This diff is collapsed.
......@@ -491,7 +491,7 @@ two windows that must be clustered.
The main output of Vidjil-algo (with the default `-c clones` command) are two following files:
- The `.vidjil` file is *the file for the Vidjil web application*.
The file is in a `.json` format (detailed in [format-analysis.org](format-analysis.org))
The file is in a `.json` format (detailed in [vidjil-format](vidjil-format))
describing the windows and their count, the consensus sequences (`-y`),
the detailed V(D)J and CDR3 designation (`-z`, see warning below), and possibly
the results of the further clustering.
......
This diff is collapsed.
......@@ -10,6 +10,7 @@ repo_name: gitlab
pages:
- vidjil-algo: vidjil-algo.md
- locus and recombinations: locus.md
- .vidjil file format: vidjil-format.md
extra_css:
- mkdocs-extra.css
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment