Commit dde21a15 authored by Mathieu Giraud's avatar Mathieu Giraud

tests: update and add tests on Demo-X5

Closes #2635.
parent 7bdf8b96
Pipeline #15459 passed with stages
in 22 seconds
......@@ -2,11 +2,11 @@
# Test examples embedded in 'doc/algo.org'
# Run 8 times
8:vidjil-algo -- V.D.J recombinations analysis
# Run nine times
9:vidjil-algo -- V.D.J recombinations analysis
# '-c clone' (or implied), five times
5: end of clones
# '-c clone' (or implied), six times
6: end of clones
# '-c windows'
0:Extracting windows
......@@ -17,3 +17,17 @@
# '-c germlines'
1:Discovering germlines
1:max.*kmer
# Demo-X5 analysis
1:found 14 windows in 14 reads
1: IGH .* -> .* 1 .* 1
1: IGH[+] .* -> .* 1 .* 1
1: IGK .* -> .* 1 .* 1
1: IGK[+] .* -> .* 2 .* 2
1: TRA .* -> .* 1 .* 1
1: TRA[+]D .* -> .* 1 .* 1
1: TRB .* -> .* 1 .* 1
1: TRB[+] .* -> .* 1 .* 1
1: TRD .* -> .* 1 .* 1
1: TRD[+] .* -> .* 2 .* 2
1: TRG .* -> .* 1 .* 1
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