Commit dcf68c36 authored by Mathieu Giraud's avatar Mathieu Giraud

Makefile: include 'data/*.bam' in release

parent 275924bf
...@@ -157,7 +157,7 @@ RELEASE_TAG="notag" ...@@ -157,7 +157,7 @@ RELEASE_TAG="notag"
RELEASE_H = $(VIDJIL_ALGO_SRC)/release.h RELEASE_H = $(VIDJIL_ALGO_SRC)/release.h
RELEASE_SOURCE = $(wildcard $(VIDJIL_ALGO_SRC)/*.cpp) $(wildcard $(VIDJIL_ALGO_SRC)/*.h) $(wildcard $(VIDJIL_ALGO_SRC)/core/*.cpp) $(wildcard $(VIDJIL_ALGO_SRC)/core/*.hpp) $(wildcard $(VIDJIL_ALGO_SRC)/tests/unit-tests/*.cpp) $(wildcard $(VIDJIL_ALGO_SRC)/core/*.h) $(wildcard $(VIDJIL_ALGO_SRC)/tests/unit-tests/*.h) $(wildcard $(VIDJIL_ALGO_SRC)/cgi/*.cpp) $(wildcard $(VIDJIL_ALGO_SRC)/tools/*.cpp) $(wildcard $(VIDJIL_ALGO_SRC)/tools/Makefile) $(wildcard $(VIDJIL_ALGO_SRC)/lib/*.cpp) $(wildcard $(VIDJIL_ALGO_SRC)/lib/*.h) $(wildcard $(VIDJIL_ALGO_SRC)/lib/*.hpp) $(wildcard $(VIDJIL_ALGO_SRC)/lib/unbam/*.c) $(wildcard $(VIDJIL_ALGO_SRC)/lib/unbam/*.h) $(wildcard $(VIDJIL_ALGO_SRC)/lib/unbam/Makefile) $(wildcard $(VIDJIL_ALGO_SRC)/lib/unbam/LICENSE) $(wildcard tools/*.py) RELEASE_SOURCE = $(wildcard $(VIDJIL_ALGO_SRC)/*.cpp) $(wildcard $(VIDJIL_ALGO_SRC)/*.h) $(wildcard $(VIDJIL_ALGO_SRC)/core/*.cpp) $(wildcard $(VIDJIL_ALGO_SRC)/core/*.hpp) $(wildcard $(VIDJIL_ALGO_SRC)/tests/unit-tests/*.cpp) $(wildcard $(VIDJIL_ALGO_SRC)/core/*.h) $(wildcard $(VIDJIL_ALGO_SRC)/tests/unit-tests/*.h) $(wildcard $(VIDJIL_ALGO_SRC)/cgi/*.cpp) $(wildcard $(VIDJIL_ALGO_SRC)/tools/*.cpp) $(wildcard $(VIDJIL_ALGO_SRC)/tools/Makefile) $(wildcard $(VIDJIL_ALGO_SRC)/lib/*.cpp) $(wildcard $(VIDJIL_ALGO_SRC)/lib/*.h) $(wildcard $(VIDJIL_ALGO_SRC)/lib/*.hpp) $(wildcard $(VIDJIL_ALGO_SRC)/lib/unbam/*.c) $(wildcard $(VIDJIL_ALGO_SRC)/lib/unbam/*.h) $(wildcard $(VIDJIL_ALGO_SRC)/lib/unbam/Makefile) $(wildcard $(VIDJIL_ALGO_SRC)/lib/unbam/LICENSE) $(wildcard tools/*.py)
RELEASE_MAKE = ./Makefile $(VIDJIL_ALGO_SRC)/Makefile $(VIDJIL_ALGO_SRC)/core/Makefile $(VIDJIL_ALGO_SRC)/tests/Makefile $(VIDJIL_ALGO_SRC)/lib/Makefile germline/Makefile data/Makefile tools/tests/Makefile doc/Makefile RELEASE_MAKE = ./Makefile $(VIDJIL_ALGO_SRC)/Makefile $(VIDJIL_ALGO_SRC)/core/Makefile $(VIDJIL_ALGO_SRC)/tests/Makefile $(VIDJIL_ALGO_SRC)/lib/Makefile germline/Makefile data/Makefile tools/tests/Makefile doc/Makefile
RELEASE_TESTS = doc/format-analysis.org data/get-sequences $(wildcard data/*.vidjil) $(wildcard data/*.analysis) $(wildcard data/*.g) $(wildcard data/*.fa) $(wildcard data/*.fq) $(VIDJIL_ALGO_SRC)/tests/repseq_vdj.py $(VIDJIL_ALGO_SRC)/tests/should-vdj-to-tap.py $(VIDJIL_ALGO_SRC)/tests/ansi.py $(wildcard $(VIDJIL_ALGO_SRC)/tests/should-vdj-tests/*.should-vdj.fa) $(wildcard $(VIDJIL_ALGO_SRC)/tests/should-vdj-tests/*.should-locus.fa) $(VIDJIL_ALGO_SRC)/tests/should-to-tap.sh $(wildcard $(VIDJIL_ALGO_SRC)/tests/should-get-tests/*.should-get) $(wildcard $(VIDJIL_ALGO_SRC)/tests/bugs/*.fa) $(wildcard $(VIDJIL_ALGO_SRC)/tests/bugs/*.should-get) $(VIDJIL_ALGO_SRC)/tests/format-json.sh $(wildcard doc/analysis-example.vidjil) $(wildcard tools/tests/*.should_get) tools/tests/should-to-tap.sh tools/diff_json.sh RELEASE_TESTS = doc/format-analysis.org data/get-sequences $(wildcard data/*.vidjil) $(wildcard data/*.analysis) $(wildcard data/*.g) $(wildcard data/*.fa) $(wildcard data/*.fq) $(wildcard data/*.bam) $(VIDJIL_ALGO_SRC)/tests/repseq_vdj.py $(VIDJIL_ALGO_SRC)/tests/should-vdj-to-tap.py $(VIDJIL_ALGO_SRC)/tests/ansi.py $(wildcard $(VIDJIL_ALGO_SRC)/tests/should-vdj-tests/*.should-vdj.fa) $(wildcard $(VIDJIL_ALGO_SRC)/tests/should-vdj-tests/*.should-locus.fa) $(VIDJIL_ALGO_SRC)/tests/should-to-tap.sh $(wildcard $(VIDJIL_ALGO_SRC)/tests/should-get-tests/*.should-get) $(wildcard $(VIDJIL_ALGO_SRC)/tests/bugs/*.fa) $(wildcard $(VIDJIL_ALGO_SRC)/tests/bugs/*.should-get) $(VIDJIL_ALGO_SRC)/tests/format-json.sh $(wildcard doc/analysis-example.vidjil) $(wildcard tools/tests/*.should_get) tools/tests/should-to-tap.sh tools/diff_json.sh
RELEASE_GERMLINES = germline/germline_id germline/get-saved-germline germline/get-germline germline/split-from-imgt.py $(wildcard germline/*.g) germline/revcomp-fasta.py germline/fasta.py RELEASE_GERMLINES = germline/germline_id germline/get-saved-germline germline/get-germline germline/split-from-imgt.py $(wildcard germline/*.g) germline/revcomp-fasta.py germline/fasta.py
RELEASE_HELP = doc/algo.org doc/locus.org doc/dev.org doc/should-vdj.org doc/credits.org doc/CHANGELOG doc/LICENSE README.org INSTALL.org RELEASE_HELP = doc/algo.org doc/locus.org doc/dev.org doc/should-vdj.org doc/credits.org doc/CHANGELOG doc/LICENSE README.org INSTALL.org
RELEASE_FILES = $(RELEASE_SOURCE) $(RELEASE_TESTS) $(RELEASE_MAKE) $(RELEASE_GERMLINES) $(RELEASE_HELP) data/segmentation.fasta $(wildcard data/*.fa.gz) $(wildcard data/*.label) RELEASE_FILES = $(RELEASE_SOURCE) $(RELEASE_TESTS) $(RELEASE_MAKE) $(RELEASE_GERMLINES) $(RELEASE_HELP) data/segmentation.fasta $(wildcard data/*.fa.gz) $(wildcard data/*.label)
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