Commit d89c834a authored by Mathieu Giraud's avatar Mathieu Giraud

doc/algo.org: update installation instructions

Closes #3003.
parent dab8e446
Pipeline #15989 canceled with stage
......@@ -161,12 +161,12 @@ Xcode should be installed first.
*** Compiling
Running 'make' from the extracted archive should be enough to install vidjil-algo and run the self-tests (see below).
It runs the commands that are detailed in the following paragraphs.
Running 'make' from the extracted archive should be enough to install vidjil-algo with germline and demo files.
It runs the three following 'make' commands.
#+BEGIN_SRC sh
make -C germline get-saved-data
make germline
# get IMGT germline databases (IMGT/GENE-DB) -- you have to agree to IMGT license:
# academic research only, provided that it is referred to IMGT®,
# and cited as "IMGT®, the international ImMunoGeneTics information system®
......@@ -175,12 +175,11 @@ make -C germline get-saved-data
# Nucl. Acids Res., 29, 207-209 (2001). PMID: 11125093
# either
make -C src # build Vijil from the sources (see the requirements, above)
make vijdil-algo # build vijil-algo from the sources (see the requirements,
# another option is: wget http://www.vidjil.org/releases/vidjil-algo-latest_x86_64 -O vidjil-algo
# to download a static binary (built for x86_64 architectures)
# or
wget http://www.vidjil.org/releases/vidjil-latest.tgzvidjil-latest_x86_64 -O vidjil-algo
# download a static binary (built for x86_64 architectures)
make demo # download demo files (S22 and L4, see demo/get-sequences)
./vidjil-algo -h # display help/usage
#+END_SRC
......
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