Commit cdbc80de authored by Mikael Salson's avatar Mikael Salson

germline: Mouse and rat germlines

See #2133
parent 1e7e9f60
{
"species": "Mus musculus",
"species_taxon_id": 10090,
"path": "mus-musculus",
"systems": {
"TRA": {
"shortcut": "A",
"color" : "#268bd2",
"description": "Mouse T-cell receptor, alpha locus (14C2)",
"recombinations": [ {
"5": ["TRAV.fa"],
"3": ["TRAJ.fa"]
} ],
"parameters": {
"seed": "13s"
}
},
"TRB": {
"shortcut": "B",
"color" : "#cb4b16",
"description": "Mouse T-cell receptor, beta locus (6B1)",
"recombinations": [ {
"5": ["TRBV.fa"],
"4": ["TRBD.fa"],
"3": ["TRBJ.fa"]
} ],
"parameters": {
"seed": "12s"
}
},
"TRG": {
"shortcut": "G",
"color" : "#dc322f",
"description": "Mouse T-cell receptor, gamma locus (13A2)",
"recombinations": [ {
"5": ["TRGV.fa"],
"3": ["TRGJ.fa"]
} ],
"parameters": {
"seed": "10s"
}
},
"TRD": {
"shortcut": "D",
"color" : "#b58900",
"description": "Mouse T-cell receptor, delta locus (14q11.2)",
"recombinations": [ {
"5": ["TRDV.fa"],
"4": ["TRDD.fa"],
"3": ["TRDJ.fa"]
} ],
"parameters": {
"seed": "10s"
}
},
"TRA+D": {
"shortcut": "a",
"color" : "#46abf2",
"description": "Mouse T-cell receptor, alpha/delta locus (14C2)",
"recombinations": [ {
"5": ["TRDV.fa"],
"4": ["TRDD.fa"],
"3": ["TRAJ.fa"]
} ],
"parameters": {
"seed": "13s"
}
},
"IGH": {
"shortcut": "H",
"color" : "#6c71c4",
"description": "Mouse immunoglobulin, heavy locus (12F2)",
"recombinations": [ {
"5": ["IGHV.fa"],
"4": ["IGHD.fa"],
"3": ["IGHJ.fa"]
} ],
"parameters": {
"seed": "12s"
}
},
"IGK": {
"shortcut": "K",
"color" : "#2aa198",
"description": "Mouse immunoglobulin, kappa locus (6C1)",
"recombinations": [ {
"5": ["IGKV.fa"],
"3": ["IGKJ.fa"]
} ],
"parameters": {
"seed": "10s"
}
},
"IGL": {
"shortcut": "L",
"color" : "#d33682",
"description": "Mouse immunoglobulin, lambda locus (16A3)",
"recombinations": [ {
"5": ["IGLV.fa"],
"3": ["IGLJ.fa"]
} ],
"parameters": {
"seed": "10s"
}
}
}
}
{
"species": "Rattus norvegicus",
"species_taxon_id": 10116,
"path": "rattus-norvegicus",
"systems": {
"IGH": {
"shortcut": "H",
"color" : "#6c71c4",
"description": "Rat immunoglobulin, heavy locus",
"recombinations": [ {
"5": ["IGHV.fa"],
"4": ["IGHD.fa"],
"3": ["IGHJ.fa"]
} ],
"parameters": {
"seed": "12s"
}
},
"IGK": {
"shortcut": "K",
"color" : "#2aa198",
"description": "Rat immunoglobulin, kappa locus",
"recombinations": [ {
"5": ["IGKV.fa"],
"3": ["IGKJ.fa"]
} ],
"parameters": {
"seed": "10s"
}
},
"IGL": {
"shortcut": "L",
"color" : "#d33682",
"description": "Rat immunoglobulin, lambda locus)",
"recombinations": [ {
"5": ["IGLV.fa"],
"3": ["IGLJ.fa"]
} ],
"parameters": {
"seed": "10s"
}
}
}
}
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