diff --git a/algo/tests/repseq_vdj.py b/algo/tests/repseq_vdj.py index 3ceb74b47d65b196bc15c67914b4be42b7485d48..897db488bd76726062df5d79ba0e5cae6c464d5a 100644 --- a/algo/tests/repseq_vdj.py +++ b/algo/tests/repseq_vdj.py @@ -155,16 +155,16 @@ class MiXCR_Result(Result): return None def populate(self): - self.vdj[V] = [self['Best V hit']] - if self['Best D hit']: - self.vdj[D] = [self['Best D hit']] - self.vdj[J] = [self['Best J hit']] + self.vdj[V] = [self['bestVHit']] + if self['bestDHit']: + self.vdj[D] = [self['bestDHit']] + self.vdj[J] = [self['bestJHit']] - self.vdj[N1] = self['N. Seq. VDJunction'] - self.vdj[N2] = self['N. Seq. DJJunction'] - self.vdj[N] = self['N. Seq. VJJunction'] + self.vdj[N1] = self['nSeqVDJunction'] + self.vdj[N2] = self['nSeqDJJunction'] + self.vdj[N] = self['nSeqVJJunction'] - self.vdj[JUNCTION] = self['AA. Seq. CDR3'] + self.vdj[JUNCTION] = self['aaSeqCDR3'] def header_mixcr_results(ff_mixcr): @@ -177,7 +177,7 @@ def header_mixcr_results(ff_mixcr): while True: l = f.next() result = MiXCR_Result(l) - yield result['Description R1'], result.to_vdj() + yield result['descrsR1'], result.to_vdj()