Commit c50c44c2 authored by Mikaël Salson's avatar Mikaël Salson

Tests: Less windows found in Stanford S22 with -w 100

No worries this comes from the fact that this tests uses a very large
window. Therefore a slight modification of the segmentation may shift the
segmentation to the right and may prevent from getting a window.

There were several cases with an affectation like that one:
+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V ?+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V ?+V+V+V+V+V+V+V+V ? ? ?+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V ?+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V ?+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V+V _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _+V _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _+V _ _ _ _ _ _ _ _ _+J+J ?+J+J+J+J+J+J+J+J+J+J+J+J+J+J+J+J+J+J+J+J+J+J+J ?+J+J+J+J

Where the last +V was not taken into account with the previous heuristic, but
was with the current one.
parent ddd0e9de
......@@ -11,10 +11,10 @@ $ Parses germline/IGHJ.fa
1: 701 bp in 13 sequences
$ Find the good number of "too short sequences" for windows of size 100
1: SEG, but no window -> 2105
1: SEG, but no window -> 2207
$ Find the good number of segmented sequences (including "too short sequences")
1: segmented 13152 reads .100%.
1: segmented 13149 reads .100%.
$ Find the good number of windows of size 100 in Stanford S22
1: found 9907 100-windows in 11047 segments
1: found 9811 100-windows in 10942 segments
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