Commit c13ebd98 authored by Mathieu Giraud's avatar Mathieu Giraud

vidjil.cpp: '-z' implies a minimum '-y'

The default value for -y is 100.
Before this commit, selecting -z 200 was really useful only with an additionnal -y 200 option.
parent bfa3225a
......@@ -567,6 +567,8 @@ int main (int argc, char **argv)
case 'z':
max_clones = atoi_NO_LIMIT(optarg);
if (max_representatives < max_clones)
max_representatives = max_clones ;
case 'A': // --all
......@@ -309,7 +309,7 @@ to compute all representative sequences.
The =-z= option limits the number of clones that are fully analyzed,
/with their V(D)J segmentation/, in particular to enable the web application
to display the clones on the grid (otherwise they are displayed on the
'?/?' axis). It should be smaller than =-y=.
'?/?' axis).
If you want to analyze more clones, you should use =-z 50= or
=-z 100=. It is not recommended to use larger values: outputting more
than 100 clones is often not useful since they can not be visualized easily
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