Commit bea9ac9c authored by Thonier Florian's avatar Thonier Florian

fuse.py; add 'complete' to availabel clone value

link to #3902
parent fcd6dab2
......@@ -219,6 +219,19 @@ class Window:
if axe == "productive":
return self.d["seg"]["junction"]["productive"]
if axe == "complete":
germline = self.get_values("germline")
if "+" in germline:
return False
elif germline in ["unexpected", "IKZF1", "ERG"]:
# maybe more specific later ?
return "unexpected"
elif germline in ["IGH","IGK","IGL","TRA","TRB","TRD","TRG"]:
# List can be set if new complete germline is defined
return True
else:
return "unexpected"
return "todo"
except:
return "?"
......
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