Commit b502ac3a authored by Mathieu Giraud's avatar Mathieu Giraud

test: testing TRB with a VJ recombination

The D, if it exists, is too short here to be assigned.
parent c5c781ec
!LAUNCH: ../../vidjil -A -G ../../germline/TRB ../../data/trb-only-VJ.fa ; cat out/trb-only-VJ.vidjil
$ Segments the read on TRB (the information is given twice, stdout + .vidjil)
2: TRB .* -> .* 1
$ The FineSegmenter outputs a segmentation without any D
1: clone-001--TRB--.*--TRBV7-2--TRBJ2-3
$ There is a segmentation in the .vidjil, but without any D
1: "3": "TRBJ2-3
0: "4": "TRBD
1: "5": "TRBV7-2
>TRBV7-2--TRBJ2-3
CAGCAGGAGGACTCGGCCGTGTATCTCTGTGCCAGCAGCTT
T
AGCACAGATACGCAGTATTTTGGCCCAGGCACCCGGCTGACAGTGCTCGGTAAGCGGGGGCTCCCGCTGAAGCCCGGGAACTGGGGAGGGGGCGCCCCGGGACGCCGGG
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