Commit b43577fc authored by Mathieu Giraud's avatar Mathieu Giraud Committed by Mikaël Salson

algo/vidjil.cpp: delta_min and seed, again

parent 27db1aeb
......@@ -885,7 +885,8 @@ int main (int argc, char **argv)
// Should come after the initialization of regular (and possibly pseudo) germlines
{
for (pair <string, string> path_file: multi_germline_paths_and_files)
multigermline->build_from_json(path_file.first, path_file.second, GERMLINES_INCOMPLETE, trim_sequences);
multigermline->build_from_json(path_file.first, path_file.second, GERMLINES_INCOMPLETE,
delta_min, seed, trim_sequences);
if ((! multigermline->one_index_per_germline) && (command != CMD_GERMLINES)) {
multigermline->insert_in_one_index(multigermline->index, true);
}
......
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