Commit b075bf92 authored by Mathieu Giraud's avatar Mathieu Giraud

doc/vidjil-algo.md: fix links

parent 354e29d7
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......@@ -530,7 +530,7 @@ The main output of Vidjil-algo (with the default `-c clones` command) are the th
The web application takes this `.vidjil` file ([possibly merged with `fuse.py`](#following-clones-in-several-samples)) for the *visualization and analysis* of clones and their
tracking along different samples (for example time points in a MRD
setup or in a immunological study).
Please see the [web application user manual](http://www.vidjil.org/user) for more information.
Please see the [web application user manual](http://www.vidjil.org/doc/user) for more information.
- The `.tsv` file is the AIRR output, for compatibility with other software
using the same format. See [below](#airr-tsv-output) for details.
......@@ -540,7 +540,7 @@ The main output of Vidjil-algo (with the default `-c clones` command) are the th
the `.vdj.fa` is a convenient way to have sequences of clones for further processing.
These sequences are at least the windows (and their count in the headers) or
the consensus sequences (`--max-consensus`) when they have been computed.
The [headers](#the-vdj-fa-format) are described below.
The [headers](#the-vdjfa-format) are described below.
Some other informations such as the further clustering are not output in this file.
The `.vdj.fa` output enables to use Vidjil-algo as a *filtering tool*,
......
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