Commit aa9a2ad5 authored by Mathieu Giraud's avatar Mathieu Giraud

vidjil.cpp: CL11, <reads> argument

parent b4bebdbb
......@@ -524,19 +524,10 @@ int main (int argc, char **argv)
if (verbose)
cout << "# verbose " << verbose << endl ;
if (optind == argc) // TODO
if (f_reads == DEFAULT_READS)
{
cout << "# using default sequence file: " << f_reads << endl ;
}
else if (optind+1 == argc)
{
f_reads = argv[optind] ;
}
else
{
cerr << ERROR_STRING << "Wrong number of arguments." << endl ;
exit(1);
}
size_t min_cover_representative = (size_t) (min_reads_clone < (int) max_auditionned ? min_reads_clone : max_auditionned) ;
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment