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vidjil
vidjil
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9e16fee5
Commit
9e16fee5
authored
May 11, 2015
by
Mikaël Salson
1
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germline: Use upstream sequences for DH-JH recombinations
parent
9ef93faa
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algo/core/germline.cpp
algo/core/germline.cpp
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algo/core/germline.cpp
View file @
9e16fee5
...
...
@@ -205,7 +205,7 @@ void MultiGermline::build_incomplete_set(string path, int max_indexing)
add_germline
(
new
Germline
(
"TRD+"
,
'd'
,
path
+
"/TRDD2-01.fa"
,
""
,
path
+
"/TRDD3-01.fa"
,
-
10
,
50
,
max_indexing
),
SEED_9
);
// DH-JH
add_germline
(
new
Germline
(
"IGH+"
,
'h'
,
path
+
"/IGHD.fa"
,
""
,
path
+
"/IGHJ.fa"
,
-
10
,
20
,
max_indexing
),
SEED_S12
);
add_germline
(
new
Germline
(
"IGH+"
,
'h'
,
path
+
"/IGHD
_upstream
.fa"
,
""
,
path
+
"/IGHJ.fa"
,
-
10
,
20
,
max_indexing
),
SEED_S12
);
// IGK: KDE, INTRON
add_germline
(
new
Germline
(
"IGK+"
,
'k'
,
path
+
"/IGK-INTRON.fa"
,
""
,
path
+
"/IGK-KDE.fa"
,
-
10
,
80
,
max_indexing
),
SEED_S10
);
...
...
Vidjil Team
@vidjilteam
Mentioned in issue
#1549 (closed)
·
Nov 29, 2016
Mentioned in issue
#1549 (closed)
Mentioned in issue #1549
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