Commit 9e16fee5 authored by Mikaël Salson's avatar Mikaël Salson

germline: Use upstream sequences for DH-JH recombinations

parent 9ef93faa
......@@ -205,7 +205,7 @@ void MultiGermline::build_incomplete_set(string path, int max_indexing)
add_germline(new Germline("TRD+", 'd', path + "/TRDD2-01.fa", "", path + "/TRDD3-01.fa", -10, 50, max_indexing), SEED_9);
// DH-JH
add_germline(new Germline("IGH+", 'h', path + "/IGHD.fa", "", path + "/IGHJ.fa", -10, 20, max_indexing), SEED_S12);
add_germline(new Germline("IGH+", 'h', path + "/IGHD_upstream.fa", "", path + "/IGHJ.fa", -10, 20, max_indexing), SEED_S12);
// IGK: KDE, INTRON
add_germline(new Germline("IGK+", 'k', path + "/IGK-INTRON.fa", "", path + "/IGK-KDE.fa", -10, 80, max_indexing), SEED_S10);
......
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