Commit 95d37647 authored by Mikael Salson's avatar Mikael Salson

doc: Link to locus.html instead of file on git

parent 8424cc73
Pipeline #21699 failed with stages
in 51 seconds
......@@ -77,7 +77,7 @@ to learn the essential features of Vidjil.
** The info panel (upper left panel)
- patient/run/set information :: user can put some informations in this case to retain about the set of samples
- locus :: germline used for analyzing the data. In case of multi-locus
data, you can select what locus should be displayed (see [[http://git.vidjil.org/blob/master/doc/locus.org][locus.org]])
data, you can select what locus should be displayed (see [[./locus.html][locus.html]])
- analysis :: name (without extension) of the loaded file used for displaying the data
- sample :: name of the current sample. You can also change the current sample by clicking directly on his name in the graph panel (when available).
#The name can be edited (“edit”).
......@@ -255,7 +255,7 @@ The processing can take a few seconds to a few hours, depending on the
software lauched, the options set in the config, the size of the sample and the server load.
The base human configurations with vidjil-algo are « TRG », « IGH », « multi » (=-g germline=), « multi+inc » (=-g germline -i=), « multi+inc+xxx » (=-g germline -i -2=, default advised configuration).
See https://github.com/vidjil/vidjil/blob/master/doc/locus.org for information on these configurations.
See [[locus.html]] for information on these configurations.
There are also configuration for other species and for other RepSeq algorithms, such as « MiXCR ».
The server mainteners can add new configurations tailored to specific needs, contact us if you have other needs.
......
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