Commit 94f44633 authored by Mathieu Giraud's avatar Mathieu Giraud

tests: update tests

parent 6226ac4a
!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -A -g $VIDJIL_DIR/data/chimera-fake-VJ.germlines -i $VIDJIL_DIR/data/chimera-fake-VJ.fa
!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -A -g $VIDJIL_DIR/data/chimera-fake-VJ.g -i $VIDJIL_DIR/data/chimera-fake-VJ.fa
# Testing a custom (fake) germlines.data
$ Report the species
......
!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -g $VIDJIL_DIR/germline -g $VIDJIL_DIR/germline/isotypes.germlines -i $VIDJIL_DIR/data/isotypes.fa
!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -g $VIDJIL_DIR/germline -g $VIDJIL_DIR/germline/isotypes.g -i $VIDJIL_DIR/data/isotypes.fa
$ Report the correct species
1: Homo sapiens .9606.
......
!LAUNCH: $VIDJIL_DIR/vidjil $VIDJIL_DEFAULT_OPTIONS -g $VIDJIL_DIR/germline/Makefile 2>&1
!EXIT_CODE: 1
$ Error, incorrect *.germlines
1:error.* cannot properly read .*germline
$ Error, incorrect *.g
1:error.* cannot properly read
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