Commit 90fdcfb2 authored by Mikaël Salson's avatar Mikaël Salson

tools/tests: Test vidjil-to-fasta.py output

parent daec6797
!LAUNCH: (cd ..; python vidjil-to-fasta.py -o tests/vidjil-to-fasta-with-sequences.fasta ../doc/analysis-example.vidjil > /dev/null; cat tests/vidjil-to-fasta-with-sequences.fasta)
$ 19 sequences with a seg field should be found
19:^>
$ Affectation for sequence YYGGGYYACGYAYAGCGGYGYTTYYCCTYTYTGYTYTGCYAAAYAACYYYYTGTGYCTYTGTGCYGYGTTYCCCGGYYYAAACYCYCYYCCTYGGCYAGGYCYGGCTTTTGGYAYYGYYTYYAATGTYCYYCCC
1:VDJ 1 95 100 105 107 134
!LAUNCH: (cd ..; python vidjil-to-fasta.py -o tests/vidjil-to-fasta.fasta ../data/no_clones.vidjil > /dev/null; cat tests/vidjil-to-fasta.fasta)
$ No data should be found
0:.
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