Commit 900a8818 authored by Vidjil Team's avatar Vidjil Team

vidjil.cpp: -c germlines, more germlines, but still hard-coded

parent e86d4f07
......@@ -585,6 +585,14 @@ int main (int argc, char **argv)
list< char* > f_germlines ;
f_germlines.push_back("germline/TRGV.fa");
f_germlines.push_back("germline/TRGJ.fa");
f_germlines.push_back("germline/TRDV.fa");
f_germlines.push_back("germline/TRDD.fa");
f_germlines.push_back("germline/TRDJ.fa");
f_germlines.push_back("germline/IGKV.fa");
f_germlines.push_back("germline/IGKJ.fa");
f_germlines.push_back("germline/IGHV.fa");
f_germlines.push_back("germline/IGHD.fa");
f_germlines.push_back("germline/IGHJ.fa");
......
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