Commit 8d80fbcd authored by Mathieu Giraud's avatar Mathieu Giraud

js/clone.js: getShortName(), compress also IKZF1 and ERG 'locus'

parent 564b062a
Pipeline #28308 passed with stages
in 54 seconds
......@@ -140,8 +140,8 @@ Clone.prototype = {
REGEX_N: /^(-?\d*)\/([ACGT]*)\/(-?\d*)$/, // 6/ACCAT/
REGEX_N_SIZE: /^(-?\d*)\/(\d*)\/(-?\d*)$/, // 6/5/
REGEX_GENE: /(IGH|IGK|IGL|TRA|TRB|TRG|TRD)([\w-*]*)$/, // IGHV3-11*03
REGEX_GENE_IGNORE_ALLELE: /(IGH|IGK|IGL|TRA|TRB|TRG|TRD)([\w-]*)([\w-*]*)$/, // IGHV3-11*03 (ignore *03)
REGEX_GENE: /(IGH|IGK|IGL|TRA|TRB|TRG|TRD|IKZF1-|ERG-)([\w-*]*)$/, // IGHV3-11*03
REGEX_GENE_IGNORE_ALLELE: /(IGH|IGK|IGL|TRA|TRB|TRG|TRD|IKZF1-|ERG-)([\w-]*)([\w-*]*)$/, // IGHV3-11*03 (ignore *03)
getAverageReadLength: function(time) {
if (this._average_read_length == 'undefined')
......
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