Commit 8c94a226 authored by Mikaël Salson's avatar Mikaël Salson

germline/tests/should-get-tests/upstream-order-IGHD.should-get: Check IGHD order

Make sure that IGHD and IGHD+up orders are identical and that the
IGHD+up looks ok.

See #3148
parent 8537dc89
cd $VIDJIL_DIR/germline
awk -F '|' '$0 ~ /^>/ {print $2}' homo-sapiens/IGHD.fa > tmp_ighdnames && \
awk -F '|' '$0 ~ /^>/ {print $2}' homo-sapiens/IGHD+up.fa > tmp_ighdupnames && \
cat tmp_ighdupnames && \
diff -q tmp_ighdnames tmp_ighdupnames && rm -f tmp_ighdupnames tmp_ighdnames
$ Some genes in correct relative order
l1: IGHD1-1.01.*IGHD1-14.01.*IGHD1-20.01.*IGHD1-26.01.*IGHD1-7.01.*IGHD1/OR15-1a.*IGHD1/OR15-1b.*IGHD2-15
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