Commit 82af4169 authored by Mathieu Giraud's avatar Mathieu Giraud Committed by Vidjil Team

test: testing fuse.py on three files

parent 52fc4b79
!LAUNCH: python ../../server/fuse.py ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ../../data/results-two-clones.vidjil ; cat fused.vidjil
$ Fuse the three files
2: ListWindows: .1000, 1000, 1000.
$ Check the producer string in output file
1: "producer": "vidjil fuse"
{
"vidjil_json_version" : "2014.10",
"samples" : {
"number" : 1,
"original_names" : [ "/some/file" ] ,
"run_timestamp" : [ "2015-02-19 16:37:06" ] ,
"producer" : [ "vidjil dev 0cf35de (2015-02-17)" ] ,
"log" : [ "Some log" ],
"commandline" : [ "Some commandline" ]
} ,
"reads" : {
"total" : [ 2000 ] ,
"segmented" : [ 1000 ] ,
"germline" : {
"IGH" : [ 950 ]
}
} ,
"clones" : [
{
"id" : "id-1",
"name": "name-1",
"sequence" : "seq-1",
"reads" : [ 800 ] ,
"top" : 1,
"germline" : "IGH"
},
{
"id" : "id-2",
"name" : "name-2",
"sequence": "seq-2",
"reads" : [ 100 ] ,
"top" : 2,
"germline" : "IGH"
}
] ,
"germlines" : {
"custom" : {
"shortcut" : "X",
"3" : [ "/some/IGHV.fa" ],
"4" : [ "/some/IGHD.fa" ],
"5" : [ "/some/IGHJ.fa" ]
}
}
}
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