Commit 7d72e3b2 authored by Mathieu Giraud's avatar Mathieu Giraud

germline/split-from-imgt.py: custom 118 positions, TRBJ sequences that should be further studied

parent f97bbfba
......@@ -124,6 +124,8 @@ CUSTOM_118 = { '': 0 # custom position of 118 in sequences without the Trp-Gl
, 'ggtaccgggttaataggaaactgacatttggagccaacactagaggaatcatgaaactca': 27 # TRAJ61*01
, 'ataccactggttggttcaagatatttgctgaagggactaagctcatagtaacttcacctg': 24 # TRGJP1*01
, 'atagtagtgattggatcaagacgtttgcaaaagggactaggctcatagtaacttcgcctg': 24 # TRGJP2*01
# , 'ctgagaggcgctgctgggcgtctgggcggaggactcctggttctgg': # TRBJ2-2P*01 ?
# , 'ctcctacgagcagtacgtcgggccgggcaccaggctcacggtcacag': # TRBJ2-7*02 ?
}
def gap_j(seq):
......
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